Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.2e-116 421.4 217 100.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.6e-115 419.5 217 99.5
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 5.3e-111 404.4 216 94.9
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.8e-109 398.3 216 94.4
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.8e-109 398.3 216 94.4
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 8.5e-109 397.1 216 94.0
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 3.0e-106 388.7 217 90.3
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 2.0e-105 386.0 217 89.4
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 3.4e-105 385.2 217 89.4
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.5e-105 384.0 217 88.5
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.7e-104 382.9 217 88.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.2e-104 382.5 205 94.6
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 4.8e-104 381.3 217 87.1
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.1e-103 380.2 217 88.5
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.4e-103 379.8 217 87.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.4e-103 379.0 217 88.9
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 4.1e-103 378.3 215 88.4
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.2e-102 376.7 215 88.4
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.3e-101 373.2 217 86.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.7e-101 372.9 217 86.6
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 3.8e-101 371.7 217 85.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 3.8e-101 371.7 217 85.7
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.5e-100 369.8 217 85.7
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.9e-100 369.4 211 88.6
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.5e-100 369.0 217 85.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.2e-100 368.6 214 87.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 4.2e-100 368.2 211 87.7
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 4.2e-100 368.2 217 85.3
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.5e-100 367.9 217 86.2
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.6e-99 366.3 217 85.3
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.7e-99 365.5 217 85.3
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.7e-99 365.5 217 85.3
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.6e-99 365.2 217 84.8
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 3.6e-99 365.2 217 84.8
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 8.0e-99 364.0 217 83.4
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.0e-98 363.6 217 84.8
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.8e-98 362.8 217 82.9
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 5.2e-98 361.3 216 86.6
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 6.8e-98 360.9 217 82.9
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 8.8e-98 360.5 217 81.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 8.8e-98 360.5 217 81.6
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 83.4
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 83.4
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 83.4
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 83.4
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 82.9
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.5e-97 359.8 216 86.1
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.6e-97 359.0 217 82.5
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 4.4e-97 358.2 219 84.5
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 5.7e-97 357.8 217 82.9
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.7e-97 357.8 217 81.1
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 7.5e-97 357.5 217 81.1
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 9.8e-97 357.1 215 83.3
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 9.8e-97 357.1 216 85.6
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.3e-96 356.7 217 81.1
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.7e-96 356.3 217 82.9
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.7e-96 356.3 217 82.5
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 80.2
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 82.0
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 82.9
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 2.2e-96 355.9 206 86.9
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.8e-96 355.5 217 82.9
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.3e-96 354.4 217 82.5
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 6.3e-96 354.4 217 82.5
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 8.3e-96 354.0 220 82.7
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 8.3e-96 354.0 217 82.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 82.9
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 81.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.4e-95 353.2 211 83.9
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.8e-95 352.8 217 81.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.1e-95 352.1 217 79.7
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 5.4e-95 351.3 217 79.3
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.0e-94 349.4 215 84.2
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 2.7e-94 349.0 293 66.2
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 4.5e-94 348.2 223 78.5
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 4.5e-94 348.2 206 84.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.0e-93 347.1 217 78.8
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.0e-93 347.1 214 81.8
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.7e-93 346.3 219 81.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 5.0e-93 344.7 206 86.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.6e-93 344.0 208 83.2
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 8.6e-93 344.0 206 84.0
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.9e-92 342.8 206 83.5
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.3e-92 341.7 214 80.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.3e-92 340.9 217 81.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 9.5e-92 340.5 218 78.0
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 9.5e-92 340.5 217 77.0
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 1.6e-91 339.7 218 78.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 1.6e-91 339.7 218 78.0
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.6e-91 339.7 214 80.8
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 2.1e-91 339.3 218 78.0
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 2.1e-91 339.3 218 78.0
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.8e-91 339.0 203 82.8
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.6e-91 338.6 202 83.7
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.4e-90 336.7 214 79.4
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.8e-90 336.3 218 77.5
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 5.2e-90 334.7 220 77.3
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 3.7e-88 328.6 185 89.7
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.4e-87 326.6 214 77.1
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 4.1e-87 325.1 196 84.2
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.2e-86 323.6 210 78.1
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.7e-85 319.7 211 74.4
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 3.9e-85 318.5 215 78.6
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 5.6e-84 314.7 217 71.9
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 9.5e-84 313.9 276 59.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 9.5e-84 313.9 202 75.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.2e-83 313.5 203 74.9
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.6e-78 296.6 185 82.7
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.3e-76 288.5 173 82.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 2.1e-75 286.2 201 73.1
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 4.7e-75 285.0 173 82.1
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.4e-74 283.5 164 83.5
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.7e-72 276.6 210 66.7
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.7e-72 276.6 221 58.8
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.9e-68 263.1 210 61.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 6.2e-67 258.1 217 66.4
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 8.9e-66 254.2 212 67.5
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 6.0e-62 241.5 141 86.5
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 2.5e-60 236.1 210 58.1
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.2e-59 233.8 139 81.3
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 4.0e-58 228.8 144 81.9
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.9e-56 221.9 216 60.6
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 7.1e-55 218.0 175 68.0
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.6e-52 208.4 148 77.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 9.6e-52 207.6 175 65.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 8.4e-48 194.5 119 83.2
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 4.3e-44 182.2 110 78.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.6e-43 179.1 162 53.7
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-42 176.4 216 52.3
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 3.1e-34 149.4 90 86.7
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 6.9e-34 148.3 83 91.6
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.0e-24 117.9 80 77.5
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-17 93.2 56 78.6
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.2e-15 86.3 46 91.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 9.4e-15 84.7 53 71.7
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 4.6e-14 82.4 65 67.7
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.8e-13 80.5 45 82.2
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.2e-09 67.8 88 45.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.4e-07 60.8 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 4.2e-07 59.3 34 85.3


User provided reference genes

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