Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.9e-68 262.3 128 100.0
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 4.2e-23 111.7 163 45.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-22 109.4 163 44.8
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.0e-21 107.1 162 43.8
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.0e-21 105.5 160 44.4
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 1.7e-19 99.8 103 57.3
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.7e-19 99.8 103 57.3
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 6.3e-19 97.8 191 37.7
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.1e-18 95.5 132 43.2
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 6.5e-16 87.8 103 49.5
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.5e-15 86.7 104 47.1
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.5e-15 85.9 103 47.6
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 2.5e-15 85.9 103 48.5
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 5.5e-15 84.7 104 48.1
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 9.4e-15 84.0 103 46.6
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 1.6e-14 83.2 104 48.1
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 2.1e-14 82.8 104 47.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.1e-14 82.8 104 45.2
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 3.6e-14 82.0 104 46.2
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.6e-14 82.0 104 45.2
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 4.7e-14 81.6 125 41.6
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.1e-14 81.3 104 45.2
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.1e-14 81.3 104 45.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 8.0e-14 80.9 104 45.2
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.0e-13 80.5 101 48.5
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.0e-13 80.5 104 47.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.0e-13 80.5 104 46.2
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.4e-13 80.1 110 45.5
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.4e-13 80.1 104 45.2
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.4e-13 80.1 104 47.1
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.4e-13 80.1 104 45.2
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 1.8e-13 79.7 104 47.1
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.3e-13 79.3 104 44.2
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.3e-13 79.3 104 45.2
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.3e-13 79.3 122 42.6
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.0e-13 79.0 104 46.2
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 3.0e-13 79.0 192 33.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 3.0e-13 79.0 101 46.5
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 3.0e-13 79.0 103 46.6
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.0e-13 78.6 103 44.7
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 5.2e-13 78.2 103 44.7
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 5.2e-13 78.2 190 31.6
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 5.2e-13 78.2 104 47.1
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 6.8e-13 77.8 103 44.7
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.8e-13 77.8 104 46.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 6.8e-13 77.8 104 47.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 6.8e-13 77.8 103 45.6
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 6.8e-13 77.8 192 32.3
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 8.8e-13 77.4 101 46.5
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 8.8e-13 77.4 103 43.7
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 8.8e-13 77.4 104 43.3
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 8.8e-13 77.4 103 46.6
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 8.8e-13 77.4 192 33.9
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.2e-12 77.0 192 32.8
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.2e-12 77.0 192 32.8
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.2e-12 77.0 104 41.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-12 76.6 104 43.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.5e-12 76.6 104 44.2
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.5e-12 76.6 104 44.2
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.5e-12 76.6 104 44.2
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.5e-12 76.6 104 43.3
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 2.0e-12 76.3 103 43.7
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 2.0e-12 76.3 103 43.7
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 2.0e-12 76.3 103 43.7
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.0e-12 76.3 103 45.6
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.6e-12 75.9 103 45.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 3.4e-12 75.5 104 45.2
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 3.4e-12 75.5 104 44.2
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.4e-12 75.5 104 41.3
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.4e-12 75.1 103 45.6
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 5.7e-12 74.7 103 43.7
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 5.7e-12 74.7 104 44.2
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 5.7e-12 74.7 104 44.2
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 5.7e-12 74.7 103 42.7
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 5.7e-12 74.7 103 42.7
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 5.7e-12 74.7 104 41.3
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 5.7e-12 74.7 104 42.3
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 7.5e-12 74.3 104 43.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 7.5e-12 74.3 104 43.3
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 7.5e-12 74.3 104 42.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 9.8e-12 73.9 104 43.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.3e-11 73.6 192 31.2
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.3e-11 73.6 192 31.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.3e-11 73.6 192 31.2
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.3e-11 73.6 192 31.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.3e-11 73.6 104 42.3
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.7e-11 73.2 101 39.6
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.7e-11 73.2 104 42.3
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.7e-11 73.2 104 42.3
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 2.2e-11 72.8 101 42.6
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.2e-11 72.8 103 42.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.2e-11 72.8 104 42.3
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.8e-11 72.4 101 47.5
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.7e-11 72.0 104 45.2
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.7e-11 72.0 104 45.2
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 6.3e-11 71.2 101 39.6
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 6.3e-11 71.2 104 41.3
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 8.3e-11 70.9 104 42.3
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 8.3e-11 70.9 104 42.3
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-10 70.1 104 41.3
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.8e-10 69.7 129 36.4
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.8e-10 69.7 104 44.2
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.4e-10 68.2 122 36.1
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 5.4e-10 68.2 100 41.0
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 7.0e-10 67.8 129 37.2
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.2e-09 67.0 114 40.4
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.2e-09 67.0 104 42.3
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.2e-09 67.0 45 64.4
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.6e-09 66.6 100 40.0
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.6e-09 66.6 102 43.1
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.0e-09 66.2 100 40.0
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.7e-09 65.9 46 63.0
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 3.5e-09 65.5 104 40.4
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 3.5e-09 65.5 101 39.6
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 4.5e-09 65.1 104 43.3
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 7.7e-09 64.3 104 41.3
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 7.7e-09 64.3 101 42.6
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.3e-08 63.5 101 37.6
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.7e-08 63.2 114 42.1
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 3.8e-08 62.0 78 43.6
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.8e-08 62.0 43 62.8
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 8.5e-08 60.8 101 36.6
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.9e-07 59.7 101 37.6
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 7.2e-07 57.8 132 30.3
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.1e-06 54.7 101 31.7


User provided reference genes

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