Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1298.5 707 100.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1145.6 701 91.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 0.0e+00 1117.8 701 87.2
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 0.0e+00 1085.1 701 85.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.8e-309 1065.4 701 85.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.0e-308 1062.0 701 83.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.7e-286 988.0 702 75.8
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-210 736.5 706 61.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.5e-204 715.7 706 60.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 7.9e-204 714.5 706 61.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.2e-191 674.1 704 58.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.8e-191 671.8 704 58.9
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.4e-189 667.2 705 59.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-188 663.7 705 57.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.7e-188 662.9 709 57.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 7.4e-186 654.8 704 57.4
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 6.3e-185 651.7 704 56.7
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.1e-184 651.0 703 57.3
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.1e-184 649.0 702 52.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-181 639.0 709 56.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.4e-179 634.0 765 46.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 4.3e-178 629.0 703 56.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 8.2e-177 624.8 706 56.1
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.8e-176 623.6 707 55.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.8e-176 623.6 695 57.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.1e-176 622.5 702 56.3
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.3e-176 622.1 709 56.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.9e-174 616.3 705 55.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.1e-172 608.6 703 56.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.9e-171 605.9 707 54.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.8e-169 599.0 722 54.4
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.4e-168 596.7 712 53.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.1e-168 594.7 713 55.3
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.9e-167 592.0 705 54.0
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.7e-167 591.7 703 53.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.0e-166 589.0 703 53.9
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-165 586.6 703 53.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-165 586.6 703 53.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.2e-165 585.9 634 59.0
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.2e-165 585.9 633 58.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.2e-165 585.1 703 53.5
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 9.4e-165 584.7 707 52.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.1e-164 583.6 702 53.0
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.7e-164 582.4 707 47.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.9e-163 579.3 703 52.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.3e-162 576.2 731 51.8
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.3e-162 576.2 703 52.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.4e-162 575.9 703 52.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 9.7e-162 574.7 704 53.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.8e-161 573.2 763 46.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 6.3e-161 572.0 712 53.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 4.1e-160 569.3 725 52.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.3e-160 568.9 712 50.3
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.0e-159 567.0 708 47.0
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.6e-159 566.6 716 52.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 2.2e-158 563.5 716 52.8
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 3.8e-158 562.8 715 50.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.2e-157 559.7 708 53.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.2e-157 559.7 707 46.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 7.2e-157 558.5 708 52.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 7.2e-157 558.5 706 51.6
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-156 556.6 712 52.5
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.8e-155 553.9 673 53.8
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.0e-155 552.7 710 50.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 4.0e-155 552.7 709 50.4
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 6.7e-155 552.0 708 52.5
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.6e-154 550.1 705 50.8
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 3.3e-154 549.7 710 50.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.4e-152 544.3 709 51.6
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.1e-152 543.1 737 48.6
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 7.7e-151 538.5 706 52.3
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 3.2e-149 533.1 714 49.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.6e-148 530.8 703 50.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.7e-146 522.3 739 49.3
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.8e-145 520.0 648 54.8
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 9.1e-144 515.0 741 47.8
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-143 514.6 705 50.9
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.5e-143 513.1 707 50.4
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 2.9e-142 510.0 706 50.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.3e-141 506.5 705 49.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.8e-140 503.4 516 62.2
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 6.1e-140 502.3 708 48.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.4e-139 501.1 706 50.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-137 494.2 709 48.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.8e-137 493.4 708 48.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.8e-136 490.7 716 48.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.4e-136 490.3 706 49.7
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 3.1e-136 490.0 709 48.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 5.4e-136 489.2 708 48.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 7.0e-136 488.8 709 48.2
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.6e-135 487.6 706 47.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.5e-135 486.1 633 52.1
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.0e-134 485.0 706 47.7
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.1e-133 481.5 706 47.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.5e-133 480.3 705 48.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.3e-133 479.6 703 48.6
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.6e-130 470.3 705 48.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-126 458.0 712 44.8
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.9e-126 456.4 520 46.5
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 8.0e-124 448.7 704 47.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-121 441.4 705 38.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.2e-120 436.8 720 47.4
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-119 433.7 518 55.6
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.8e-119 432.2 710 38.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 8.6e-118 428.7 708 38.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.5e-117 427.2 708 38.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-116 424.9 532 44.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-115 421.4 711 46.6
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.6e-114 417.2 710 38.0
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.1e-109 401.7 479 58.0
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.2e-108 398.3 710 35.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.9e-105 386.3 578 49.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.4e-105 385.6 732 37.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 8.4e-105 385.6 728 38.9
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.5e-103 380.2 631 47.5
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.1e-99 368.6 526 49.4
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.6e-84 318.2 531 40.3
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-83 315.1 535 39.4
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.8e-78 298.1 736 41.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.5e-77 294.3 425 52.0
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.6e-77 293.1 314 49.4
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 3.1e-75 287.3 470 43.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-72 277.7 480 37.1
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-68 265.4 488 35.5
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.2e-65 254.6 362 41.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-64 251.5 258 68.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.7e-62 243.0 255 71.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.3e-61 240.7 434 36.9
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.1e-56 225.7 273 47.3
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.1e-55 221.5 253 48.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 8.8e-46 189.5 209 49.8
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.4e-43 181.4 123 71.5
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.1e-43 181.0 714 30.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 7.2e-40 169.9 202 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.6e-39 168.7 250 40.0
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.0e-38 164.5 123 65.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.0e-35 153.3 151 55.6
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.7e-33 148.7 515 28.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-32 146.0 123 61.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 5.5e-32 143.7 134 60.4
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-30 138.3 123 56.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 6.8e-30 136.7 140 54.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 6.8e-30 136.7 109 60.6
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 9.8e-29 132.9 248 35.5
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.4e-27 128.3 136 48.5
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-25 122.5 98 65.3
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.3e-25 122.5 132 48.5
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 8.6e-25 119.8 119 54.6
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.6e-25 119.8 96 65.6
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-24 119.4 125 48.8
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.1e-24 119.4 123 48.8
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-24 118.6 74 78.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-21 106.3 106 51.9
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-20 104.8 106 50.0
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.9e-20 104.0 71 67.6
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-20 104.0 106 50.9
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-20 104.0 106 50.9
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-18 99.4 106 50.9
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-17 94.0 106 49.1
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 6.6e-17 93.6 54 81.5
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-15 89.0 106 45.3
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-15 89.0 106 47.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.3e-14 85.1 293 27.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.2e-13 82.8 162 33.3
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-13 82.0 65 63.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 4.4e-13 80.9 262 27.9
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-12 78.6 65 60.0
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-12 78.2 65 61.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-12 78.2 65 61.5
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-12 77.8 65 60.0
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 3.7e-12 77.8 125 38.4
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-12 77.4 65 60.0
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 5.4e-11 73.9 259 25.5
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 3.5e-10 71.2 93 47.3
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.6e-10 70.9 44 65.9
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.7e-07 60.8 61 45.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.4e-06 59.3 28 89.3
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 5.2e-06 57.4 137 38.0


User provided reference genes

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