Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 4450.6 2268 100.0
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 3383.2 2240 78.4
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 3374.7 2238 78.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 3356.2 2252 78.0
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2960.2 1676 91.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 2897.5 1957 76.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2026.9 2296 50.8
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1999.6 2304 50.0
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1846.2 2267 47.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1782.3 2266 45.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1728.0 2377 44.2
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1727.2 2291 45.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1709.1 2303 45.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1706.0 2258 45.7
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1698.3 2309 44.3
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1693.3 2273 44.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1691.8 2265 43.8
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1671.0 2310 44.9
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1669.1 2292 44.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1663.3 2292 43.9
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1662.9 2293 43.7
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1660.2 2320 42.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1656.7 2282 43.1
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1627.5 2283 43.2
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1593.2 2293 43.1
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1585.9 2291 42.3
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1584.3 2282 42.3
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1520.4 2315 41.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1511.9 2283 40.7
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1502.6 2089 42.9
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1500.3 2291 40.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1499.2 2195 41.7
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1487.6 2273 40.3
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1483.8 2067 42.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1474.5 2290 41.0
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1470.7 2283 39.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1470.3 2293 40.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1469.1 2290 40.3
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1441.8 2222 41.5
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1435.2 1962 43.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1432.9 2245 40.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1424.5 2270 40.1
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1422.5 2283 39.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1412.5 2293 38.6
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1406.0 2230 39.5
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1389.4 2215 40.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1382.9 2097 41.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1379.8 2234 39.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1376.7 2208 39.7
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1373.2 2345 39.4
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1365.9 2307 37.5
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1352.0 2267 38.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1349.7 2289 38.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1345.5 2221 38.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1333.5 2304 39.4
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1331.6 2312 37.3
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1331.2 2295 37.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1328.2 2285 37.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1327.8 2306 37.9
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1325.1 2275 37.5
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1316.2 2322 37.4
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1311.2 2335 36.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1302.0 2294 36.9
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1299.6 2282 38.2
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1299.6 2280 36.7
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1299.3 2325 37.2
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1277.7 2285 37.3
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1270.0 2286 37.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1264.2 2311 37.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1242.6 2307 37.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1228.8 2164 38.2
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1214.9 2297 36.4
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1213.0 2191 37.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1190.6 2311 36.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1159.4 2283 35.9
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1153.7 1754 40.8
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1129.8 2225 35.8
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1115.5 2360 34.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1096.3 2310 34.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1095.5 2251 35.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1094.0 1986 35.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1092.8 2320 34.7
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1086.2 2258 34.9
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1079.7 2353 34.4
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1077.4 2199 35.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1076.6 2352 34.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 3.1e-302 1043.1 1847 36.4
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.2e-300 1036.9 2034 33.7
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.8e-300 1036.2 1769 40.0
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 1.8e-297 1027.3 2330 32.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 6.7e-297 1025.4 1707 38.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.6e-290 1004.2 2184 33.8
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 3.4e-277 959.9 2168 33.1
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.4e-273 948.0 1495 40.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 4.4e-272 943.0 2301 32.7
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 7.2e-251 872.5 1809 33.6
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-238 832.0 880 53.4
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.1e-218 764.6 2133 30.2
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.9e-179 635.2 776 46.5
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.2e-157 562.8 2375 26.1
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.8e-156 558.9 1123 35.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.4e-150 536.6 1134 35.4
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 6.5e-143 513.8 502 56.0
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 4.8e-138 497.7 1095 34.0
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.7e-133 481.1 1259 32.0
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.5e-126 458.8 427 57.4
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.5e-126 458.8 2340 23.5
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.7e-119 436.0 893 32.6
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.6e-117 429.5 2308 24.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.9e-111 408.3 781 35.3
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.6e-109 401.7 2093 24.8
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.9e-105 389.4 541 43.1
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 7.8e-96 357.5 509 42.6
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-93 350.1 463 41.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.7e-93 348.2 307 61.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.9e-81 309.7 870 31.1
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.8e-79 303.1 330 50.9
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.6e-77 296.6 349 49.9
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.8e-77 295.8 490 40.0
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.7e-74 286.6 554 35.7
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 9.0e-60 237.7 329 44.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 5.7e-54 218.4 182 58.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.4e-47 197.2 375 38.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.3e-46 192.6 428 31.5
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.8e-45 188.7 326 36.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.8e-45 188.7 343 35.0
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-44 187.2 423 32.9
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 6.7e-39 168.3 234 43.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.6e-35 156.4 419 29.6
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.2e-33 149.1 288 36.1
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 5.2e-31 142.1 71 98.6
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 8.2e-29 134.8 314 31.2
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 3.1e-28 132.9 140 49.3
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.2e-25 122.9 121 52.1
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.6e-24 120.6 277 31.8
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.7e-24 119.0 149 43.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.2e-21 110.2 305 29.8
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.1e-20 106.3 111 51.4
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-19 104.4 79 62.0
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.5e-19 102.8 131 42.7
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 2.3e-18 100.1 203 36.5
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.9e-18 99.8 142 39.4
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-17 97.8 262 30.2
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.0e-15 91.3 213 32.9
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.4e-15 90.9 355 23.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.8e-15 88.6 176 36.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 2.2e-13 83.6 64 59.4
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.8e-13 83.2 141 39.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.4e-12 80.1 335 23.9
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.4e-12 80.1 335 23.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.2e-11 77.8 69 60.9
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 7.8e-11 75.1 113 38.9
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.3e-10 74.3 215 29.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 2.5e-09 70.1 426 21.6
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.3e-09 69.7 80 42.5
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 6.1e-08 65.5 112 35.7
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 4.0e-07 62.8 191 31.4
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.0e-06 60.5 288 25.0
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.4e-06 59.3 149 30.9
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 5.8e-06 58.9 56 51.8


User provided reference genes

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