Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 2140.5 1144 100.0
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1842.8 1146 87.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1739.9 1024 92.5
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1536.2 1157 74.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1526.5 1165 71.5
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1511.9 1157 72.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1510.7 1153 72.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1162 72.7
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1499.2 1151 72.3
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1491.5 1160 71.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1490.3 1153 71.7
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1143 70.2
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1485.3 1147 71.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1148 69.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1479.9 1152 72.1
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1479.2 1170 68.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1473.8 1143 68.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1473.0 1154 70.9
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1471.4 1155 70.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1468.4 1149 71.1
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1466.8 1146 69.4
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1466.1 1151 68.9
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1466.1 1154 70.9
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1465.7 1149 69.6
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1461.0 1154 70.6
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1457.2 1153 68.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1457.2 1150 70.8
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1456.4 1153 69.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1456.0 1145 70.1
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1453.3 1150 70.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1451.8 1187 66.7
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1448.0 1179 70.2
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1187 67.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1446.4 1152 70.1
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1444.1 1152 68.9
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1442.9 1147 68.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1441.0 1182 69.0
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1440.2 1166 70.2
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1207 66.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 1155 70.0
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 1156 70.2
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1167 67.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1150 70.0
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1162 68.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1157 69.7
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1169 66.6
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1155 70.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1155 70.3
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1428.7 1169 66.7
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1428.3 1167 69.6
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1426.4 1165 68.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1179 68.4
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1150 67.7
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1142 69.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1419.8 1149 69.4
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1150 69.8
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1162 69.9
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1412.9 1144 69.7
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1406.7 1152 68.9
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1155 69.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1397.9 1160 67.4
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1163 67.9
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1395.2 1152 66.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1384.4 1151 67.6
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1146 65.6
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1148 67.9
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1158 65.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1375.1 1111 68.7
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1172 66.8
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1150 67.5
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1148 67.5
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1370.1 1166 66.9
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1168 67.0
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1166 66.9
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1169 66.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1155 67.9
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1168 66.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1365.1 1168 66.4
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1364.7 1149 67.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1358.2 1172 66.6
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1349.0 1172 63.9
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1348.6 1147 67.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1347.4 1145 67.1
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1335.9 1148 64.5
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1317.0 1144 63.7
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1306.2 1177 64.5
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1295.4 1213 61.7
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1208.7 933 72.1
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1206.8 899 73.2
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1111.7 1241 52.5
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1097.4 1223 53.5
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1089.7 1215 54.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.4e-310 1068.5 914 64.7
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.8e-298 1027.7 1153 53.6
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.6e-294 1015.0 743 70.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.9e-292 1009.6 604 87.1
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.0e-289 999.6 589 88.3
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 7.8e-286 987.6 590 90.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.6e-265 917.9 742 66.4
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.1e-263 914.1 519 91.3
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.1e-260 904.0 519 90.2
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.0e-253 879.4 536 86.6
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 6.9e-250 868.2 1391 40.5
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 8.4e-240 834.7 556 80.8
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 5.7e-220 768.8 621 66.7
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 9.7e-220 768.1 519 78.0
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 3.2e-215 753.1 536 77.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 5.5e-191 672.5 603 62.4
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 4.9e-171 606.3 1165 36.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.7e-166 589.7 564 60.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.2e-147 527.7 463 65.2
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.4e-141 507.7 392 68.6
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 2.9e-123 447.6 329 70.5
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.2e-122 443.7 322 73.0
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.5e-115 419.9 478 54.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.4e-109 402.1 781 34.8
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.7e-107 395.2 537 47.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.2e-96 357.1 358 55.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.4e-90 336.3 374 53.7
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.5e-87 328.9 1192 27.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-87 328.6 374 52.1
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 7.7e-84 316.6 399 52.1
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 4.2e-82 310.8 213 75.6
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.9e-75 288.1 223 70.0
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.8e-75 287.7 253 55.3
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 3.6e-73 281.2 250 61.2
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-66 256.9 149 89.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.6e-65 255.8 147 86.4
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.8e-65 255.0 243 60.9
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-59 235.7 179 67.0
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.5e-58 229.9 198 61.1
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-56 226.5 364 40.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 5.8e-55 220.7 369 40.7
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 4.9e-54 217.6 369 40.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.1e-53 214.5 369 39.8
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-50 205.7 106 97.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 9.5e-50 203.4 113 90.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.3e-48 198.7 111 90.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 5.2e-48 197.6 113 88.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 9.9e-47 193.4 113 86.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-46 193.0 113 86.7
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.7e-43 182.6 109 86.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 5.6e-42 177.6 106 87.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.6e-41 174.9 580 28.6
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.8e-40 172.6 185 54.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.4e-39 168.3 99 86.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.2e-38 165.6 96 85.4
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.9e-38 165.2 89 93.3
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 2.1e-33 149.1 81 92.6
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.4e-29 135.6 120 60.0
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-26 126.7 177 40.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 9.9e-23 113.6 75 77.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.7e-22 112.8 85 65.9
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.9e-22 112.1 75 76.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.9e-22 112.1 71 80.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 2.7e-20 105.5 73 71.2
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.3e-19 102.4 91 63.7
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.1e-17 95.9 176 43.2


User provided reference genes

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