Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.5e-99 364.0 177 100.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-72 276.2 177 75.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 6.4e-70 267.7 177 74.0
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.0e-67 258.1 177 69.5
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.9e-66 256.1 177 69.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.8e-65 252.3 120 96.7
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.4e-61 239.2 171 67.8
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.7e-59 233.0 171 62.0
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 3.0e-59 232.3 163 69.9
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.1e-58 230.3 179 62.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 4.3e-58 228.4 172 63.4
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 9.5e-58 227.3 175 61.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.6e-57 225.3 180 58.9
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.1e-57 224.2 172 60.5
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.3e-56 222.6 174 62.6
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.1e-56 222.2 171 62.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 8.9e-56 220.7 173 61.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.0e-55 219.5 179 58.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.6e-55 219.2 176 61.4
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 7.6e-55 217.6 176 60.8
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.6e-55 217.6 176 60.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 9.9e-55 217.2 176 60.8
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.3e-54 216.9 195 54.9
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.7e-54 216.5 175 58.3
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.7e-54 215.3 176 60.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 6.4e-54 214.5 172 59.3
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.3e-54 214.2 175 60.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.1e-53 213.8 174 59.8
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.4e-53 213.4 163 63.2
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.2e-53 212.2 174 58.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.2e-53 212.2 174 58.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.1e-53 211.8 195 55.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 9.2e-53 210.7 195 55.9
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.5e-52 208.8 176 58.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.6e-52 208.4 173 59.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.6e-52 208.4 175 58.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.0e-52 208.0 182 57.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.0e-52 208.0 177 57.1
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.3e-51 206.8 174 58.0
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.3e-51 206.1 175 57.1
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-51 206.1 120 78.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 5.1e-51 204.9 180 54.4
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.6e-51 204.5 172 57.6
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.6e-51 204.1 120 78.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-50 203.8 180 54.4
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.1e-50 203.8 171 57.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.9e-50 203.0 176 56.2
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 4.3e-50 201.8 170 56.5
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.3e-50 201.8 181 53.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 7.3e-50 201.1 203 51.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 7.3e-50 201.1 177 56.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-49 199.9 173 56.1
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.6e-49 199.9 180 54.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.6e-49 199.9 174 56.3
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.8e-49 199.1 176 55.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-49 198.7 203 51.2
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.2e-49 198.0 171 56.1
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 6.2e-49 198.0 175 53.7
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 8.1e-49 197.6 175 51.4
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.1e-49 197.6 177 53.7
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.4e-48 196.1 162 56.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.1e-48 195.7 195 50.8
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.0e-48 195.3 184 50.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.0e-48 195.3 171 55.6
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.2e-48 194.9 135 62.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 8.9e-48 194.1 156 58.3
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 8.9e-48 194.1 132 64.4
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.9e-48 194.1 130 64.6
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-47 193.0 174 56.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-47 193.0 139 64.7
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-47 193.0 175 53.1
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.0e-47 193.0 175 52.0
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.0e-47 193.0 175 52.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.4e-47 191.8 137 62.0
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 4.4e-47 191.8 159 56.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 5.8e-47 191.4 174 55.7
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.6e-47 191.0 179 53.1
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 9.9e-47 190.7 285 39.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-46 190.3 172 56.4
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.2e-46 189.5 180 51.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.9e-46 189.1 167 55.7
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.8e-46 188.7 120 70.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.9e-46 188.3 156 55.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 4.9e-46 188.3 166 54.8
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.4e-46 187.6 119 67.2
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-45 187.2 171 52.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-45 186.4 182 50.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-45 186.4 182 50.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.4e-45 186.0 144 59.7
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.2e-44 183.7 127 63.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.5e-44 182.2 163 52.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 4.6e-44 181.8 134 59.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 6.0e-44 181.4 161 55.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 6.0e-44 181.4 161 55.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 6.0e-44 181.4 161 55.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.8e-44 181.0 126 63.5
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.0e-43 180.6 171 49.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-43 180.6 134 61.2
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.0e-43 180.6 121 67.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.3e-43 180.3 173 51.4
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.3e-43 179.5 155 55.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.0e-43 179.1 127 60.6
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.9e-43 178.7 178 53.9
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.9e-43 178.7 170 51.8
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.6e-43 177.9 179 48.0
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 6.6e-43 177.9 161 55.3
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-42 176.8 166 54.2
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.5e-42 176.8 166 54.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.5e-42 176.8 118 61.9
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.9e-42 176.4 175 50.3
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.5e-42 176.0 168 50.0
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.3e-42 175.6 160 53.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-42 175.6 161 55.3
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-42 175.6 161 55.3
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-42 175.6 161 55.3
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.3e-42 175.6 161 55.3
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.3e-42 175.3 168 50.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.6e-42 174.9 158 55.1
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.6e-42 174.9 181 49.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.6e-42 174.9 181 49.2
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.6e-42 174.9 126 61.1
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.6e-42 174.1 115 68.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 9.6e-42 174.1 128 61.7
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.3e-41 173.7 113 66.4
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.3e-41 173.7 161 54.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.6e-41 173.3 167 49.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-41 173.3 164 53.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 4.8e-41 171.8 166 48.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.1e-40 170.6 162 52.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 4.4e-39 165.2 166 50.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.8e-39 164.9 122 61.5
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.8e-39 164.9 165 48.5
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-38 163.3 110 67.3
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.9e-38 162.5 120 61.7
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.1e-37 157.9 120 59.2
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.7e-36 156.0 182 47.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 4.3e-34 148.7 171 43.3
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.0e-32 142.1 150 47.3
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.9e-32 141.4 121 52.9
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.9e-32 141.4 159 44.0
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.5e-31 140.2 160 44.4
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.2e-30 136.3 158 39.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.9e-30 135.2 95 63.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.4e-30 134.8 123 50.4
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.4e-30 134.8 96 63.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.2e-29 132.5 164 46.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.2e-29 132.5 93 62.4
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.2e-29 132.1 90 62.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.6e-28 130.2 107 52.3
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.1e-27 125.2 116 49.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-25 120.2 125 52.8
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.8e-25 119.4 140 43.6
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.0e-23 113.2 114 43.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.6e-23 112.8 109 48.6
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 5.8e-23 111.7 120 45.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.3e-22 110.5 109 50.5
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-21 107.5 74 60.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.4e-21 107.1 131 43.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.2e-21 105.5 152 36.2
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.2e-21 105.5 120 39.2
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 9.3e-21 104.4 152 36.2
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.6e-20 103.6 107 45.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-20 103.6 68 67.6
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.5e-20 102.4 121 38.0
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 4.3e-18 95.5 159 32.7
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-16 90.5 69 59.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 6.5e-14 81.6 101 38.6
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.3e-11 73.2 65 47.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.5e-10 70.5 135 34.1
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.7e-09 65.9 97 37.1
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.2e-07 60.8 42 61.9


User provided reference genes

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