Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 0.0e+00 1466.8 820 100.0
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.8e-285 985.3 820 69.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.7e-264 915.6 822 61.9
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.4e-241 840.1 803 60.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.8e-231 806.6 825 53.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 6.3e-229 798.1 819 52.7
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 5.3e-228 795.0 794 55.5
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.2e-226 789.6 819 53.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.8e-226 788.9 793 52.8
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 8.5e-226 787.7 817 51.8
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 9.4e-225 784.3 811 52.2
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.1e-224 783.1 793 54.7
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 4.6e-224 781.9 822 49.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.3e-221 773.9 811 51.5
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.7e-221 773.5 811 51.5
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 3.4e-219 765.8 811 51.9
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.7e-218 763.5 798 51.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.9e-218 762.7 831 54.0
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 8.5e-218 761.1 823 54.8
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.6e-216 756.9 809 57.7
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.7e-216 756.1 767 52.7
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 3.9e-215 752.3 832 49.3
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.0e-214 750.0 823 48.7
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 2.6e-214 749.6 763 52.3
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.3e-213 747.3 865 48.9
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 2.1e-208 729.9 817 49.9
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 4.7e-208 728.8 767 58.9
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 2.3e-207 726.5 804 56.0
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 2.8e-205 719.5 779 48.8
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 6.3e-205 718.4 760 50.8
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 8.2e-205 718.0 775 50.1
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.2e-203 714.1 815 48.6
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.7e-197 693.7 722 53.3
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.2e-197 693.3 812 51.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 3.7e-197 692.6 820 54.4
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 8.3e-197 691.4 845 46.2
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 2.5e-193 679.9 804 47.8
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 5.5e-193 678.7 547 63.8
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.8e-191 673.7 774 47.8
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 5.2e-191 672.2 757 48.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.5e-190 670.6 773 51.5
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 2.0e-190 670.2 928 43.9
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.4e-190 669.5 770 48.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.3e-189 667.5 830 45.9
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.7e-189 667.2 764 48.7
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.2e-189 666.8 773 48.4
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 3.7e-189 666.0 724 54.8
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.8e-188 663.7 827 45.6
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 1.2e-187 661.0 766 48.8
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.2e-187 661.0 766 48.8
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.7e-187 659.8 775 47.5
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.0e-186 657.9 766 47.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 2.3e-186 656.8 769 47.1
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 3.3e-185 652.9 809 45.6
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 6.1e-184 648.7 598 56.5
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.0e-183 647.9 795 45.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.0e-183 647.9 814 45.5
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 3.4e-182 642.9 758 47.8
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 5.8e-182 642.1 763 49.0
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 7.5e-182 641.7 864 42.9
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.2e-181 640.2 784 46.3
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 7.0e-180 635.2 815 44.9
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.5e-179 632.9 772 45.9
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 4.6e-179 632.5 812 45.1
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 7.8e-179 631.7 772 45.6
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 1.3e-178 630.9 779 46.5
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 5.0e-178 629.0 780 47.2
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 2.5e-177 626.7 814 44.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 5.6e-177 625.5 796 44.2
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.4e-175 620.9 770 52.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.5e-174 617.5 765 45.4
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.5e-174 615.1 773 46.4
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 7.0e-172 608.6 805 44.2
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 3.3e-169 599.7 715 46.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.2e-168 597.8 843 42.9
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.9e-165 586.6 780 44.9
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.4e-164 584.3 757 44.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.1e-164 582.8 817 44.3
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.4e-164 582.4 590 51.4
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 1.7e-162 577.4 809 48.8
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.5e-161 574.3 855 46.0
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 6.2e-160 568.9 791 50.2
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.1e-159 568.2 851 40.1
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 2.2e-157 560.5 622 49.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 9.2e-156 555.1 779 42.7
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 7.8e-155 552.0 592 48.6
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 1.9e-153 547.4 783 41.0
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 8.4e-149 531.9 592 48.8
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 6.6e-146 522.3 841 37.8
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.6e-144 517.7 631 53.9
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-143 514.6 572 48.6
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.7e-141 507.7 647 47.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 2.7e-139 500.4 614 46.6
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.7e-139 500.4 615 46.3
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 3.5e-131 473.4 791 36.4
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 8.5e-117 425.6 542 43.2
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-99 368.6 503 43.1
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.8e-96 356.7 642 37.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 7.5e-81 306.2 350 48.3
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 4.6e-62 243.8 338 42.6
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 4.7e-59 233.8 196 60.2
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 2.7e-54 218.0 544 31.2
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 9.5e-52 209.5 420 35.5
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 6.4e-48 196.8 783 33.2
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 1.0e-45 189.5 747 33.3
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 4.7e-43 180.6 136 72.1
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 4.7e-43 180.6 136 72.1
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.4e-42 179.1 143 61.5
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 6.8e-42 176.8 269 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.3e-40 172.6 469 27.9
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 2.4e-39 168.3 632 25.2
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.4e-39 167.2 133 65.4
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 3.0e-37 161.4 648 22.5
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 2.5e-28 131.7 151 43.0
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 2.5e-28 131.7 151 43.0
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 4.8e-27 127.5 113 57.5
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.7e-24 119.0 122 56.6
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 8.4e-24 116.7 117 53.0
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 4.0e-18 97.8 86 52.3
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 2.2e-16 92.0 91 46.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-12 79.3 76 55.3
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 9.6e-12 76.6 78 53.8
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 5.3e-10 70.9 78 51.3
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 2.9e-08 65.1 147 29.9
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 6.5e-08 63.9 160 23.8
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 7.1e-07 60.5 59 47.5
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 52 51.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 1.6e-06 59.3 53 50.9
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 54 50.0
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 2.1e-06 58.9 54 50.0
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 2.1e-06 58.9 53 50.9
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 3.5e-06 58.2 54 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2113 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.8 251 22.3
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 4.6e-06 57.8 50 50.0
HPP92_013191 Vanilla planifolia HOM05D002785 ORTHO05D003042 4.6e-06 57.8 177 20.9
HanXRQChr03g0090051 Helianthus annuus HOM05D002785 ORTHO05D003042 6.1e-06 57.4 137 23.4
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 6.1e-06 57.4 54 48.1
Lsat_1_v5_gn_2_68420 Lactuca sativa HOM05D005833 ORTHO05D011576 6.1e-06 57.4 54 50.0
ECA234G1849 Erigeron canadensis HOM05D002785 ORTHO05D003042 7.9e-06 57.0 137 24.1
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 7.9e-06 57.0 54 48.1


User provided reference genes

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