Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.4e-198 695.3 346 100.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.2e-138 496.1 346 71.4
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.7e-127 459.9 336 65.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 8.5e-127 457.6 362 65.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.9e-126 456.4 343 65.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.7e-125 452.6 327 66.4
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.6e-125 452.2 339 65.8
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.3e-124 449.5 321 66.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.0e-124 449.1 291 72.5
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.6e-123 446.0 332 66.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.7e-122 443.4 292 70.9
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 8.2e-122 441.0 343 62.1
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.1e-121 440.7 313 65.8
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.1e-121 439.1 297 67.0
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 5.3e-121 438.3 343 61.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.2e-120 437.2 290 69.3
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.0e-119 434.1 290 68.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.9e-119 432.6 291 67.4
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.9e-119 432.6 290 69.0
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 7.2e-118 427.9 300 66.0
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.7e-117 426.0 310 65.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.6e-117 425.6 334 62.9
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.4e-116 423.7 286 68.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.3e-116 422.9 304 62.5
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.3e-116 422.9 286 66.4
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.3e-116 422.9 343 59.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.0e-116 422.5 293 66.6
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 8.8e-116 421.0 290 65.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.1e-115 420.6 310 64.2
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.6e-115 419.5 288 65.6
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.3e-115 419.1 285 66.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 4.4e-115 418.7 303 62.0
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 7.4e-115 417.9 288 65.3
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.2e-114 416.4 332 61.7
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.8e-114 416.0 288 64.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.7e-114 415.6 346 57.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.4e-113 413.7 289 64.0
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 4.1e-113 412.1 312 63.8
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.9e-112 408.3 260 71.5
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-112 408.3 291 66.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 5.9e-112 408.3 362 56.1
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.9e-112 408.3 333 58.6
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.3e-111 407.1 321 62.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.5e-110 403.7 326 59.5
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 4.2e-110 402.1 284 63.7
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 4.2e-110 402.1 251 73.7
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 5.5e-110 401.7 288 63.5
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.6e-109 400.2 283 64.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 2.1e-109 399.8 280 67.1
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.8e-108 396.7 321 62.3
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.2e-107 394.0 317 59.3
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.5e-107 393.7 282 66.3
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-107 393.3 310 62.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.7e-107 391.7 281 66.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.7e-107 391.0 284 64.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 9.7e-107 391.0 281 65.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.3e-106 388.3 298 61.4
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.4e-105 387.1 255 68.6
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 3.1e-105 386.0 284 64.1
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 7.7e-104 381.3 284 63.0
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.7e-103 380.2 249 69.9
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.2e-103 379.8 284 62.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.8e-103 379.0 256 66.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.2e-101 374.0 251 68.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-101 373.6 284 59.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.6e-101 373.6 304 56.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-100 369.8 284 60.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.5e-99 367.1 284 58.5
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.5e-99 367.1 323 55.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.6e-99 366.3 284 59.5
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.4e-99 365.9 286 59.1
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 5.7e-99 365.2 307 55.4
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 9.8e-99 364.4 307 56.0
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 9.8e-99 364.4 284 59.2
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.3e-98 364.0 305 56.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-98 363.2 284 58.8
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 6.3e-98 361.7 284 57.7
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 8.3e-98 361.3 306 55.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.4e-97 359.8 223 72.6
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.3e-95 354.0 247 67.2
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.3e-95 353.2 262 60.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 9.5e-94 347.8 247 65.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 2.1e-93 346.7 282 57.4
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.1e-93 345.1 285 58.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 7.8e-88 328.2 285 54.7
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.9e-87 326.2 260 57.7
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.3e-86 321.6 288 52.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.1e-85 320.1 288 52.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 6.1e-85 318.5 298 56.0
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 4.0e-84 315.8 306 50.3
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 6.8e-84 315.1 229 67.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.5e-83 313.9 285 55.4
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 9.8e-83 311.2 212 67.9
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-80 304.3 290 50.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.7e-80 303.1 190 72.6
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.3e-79 300.1 203 67.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 6.6e-79 298.5 278 50.0
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.3e-78 296.2 299 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.3e-78 295.0 279 48.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.6e-75 286.6 188 66.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 5.8e-75 285.4 292 49.0
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.5e-75 285.0 191 67.0
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 3.9e-71 272.7 278 46.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.3e-70 269.6 165 70.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.3e-68 263.5 299 44.8
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 9.5e-62 241.5 153 69.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.7e-61 239.2 154 66.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-58 231.1 180 61.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.8e-56 221.9 245 49.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 3.0e-55 219.9 243 47.3
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.3e-54 216.1 245 48.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.6e-53 213.0 206 54.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 8.1e-53 211.8 148 65.5
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-51 208.0 188 59.6
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.4e-42 175.6 229 44.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.2e-40 171.4 124 62.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.1e-39 166.0 166 53.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 8.7e-39 165.2 114 62.3
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.5e-38 164.5 216 37.0
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.8e-37 160.2 195 45.6
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 9.9e-35 151.8 277 33.9
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 2.2e-34 150.6 127 56.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 6.0e-32 142.5 128 53.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.1e-29 134.0 100 65.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-29 133.7 100 65.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.8e-29 132.9 79 69.6
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 9.0e-28 128.6 100 60.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-20 105.1 67 71.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.5e-19 99.8 73 57.5
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 5.0e-18 96.3 117 52.1
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.9e-17 94.4 224 36.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.1e-12 76.6 85 47.1
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.2e-11 75.1 67 58.2


User provided reference genes

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