Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.4e-235 819.3 423 100.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.0e-219 766.5 423 92.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 3.0e-219 765.0 423 91.7
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.5e-218 762.7 423 92.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.5e-218 762.7 423 92.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.1e-216 756.5 423 92.0
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 3.5e-215 751.5 423 91.0
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.8e-214 748.0 419 91.2
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.2e-212 743.0 420 89.0
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 3.0e-211 738.4 423 88.7
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.2e-211 737.6 420 88.3
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 6.8e-211 737.3 419 88.8
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 8.8e-211 736.9 422 89.1
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 9.8e-210 733.4 423 87.9
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.3e-209 733.0 419 88.8
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.2e-209 732.3 420 88.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 4.9e-209 731.1 423 87.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 4.9e-209 731.1 422 88.4
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.1e-208 729.9 422 87.2
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.1e-208 729.9 422 87.0
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.2e-207 726.5 422 87.4
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.2e-207 726.5 421 87.9
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.6e-207 726.1 423 86.5
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.0e-207 725.7 423 87.2
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 86.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.7e-207 725.3 419 87.8
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.7e-207 725.3 423 87.9
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 3.5e-207 724.9 420 87.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.5e-207 724.5 422 86.5
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 4.5e-207 724.5 419 87.8
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.5e-207 724.5 419 87.8
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 5.9e-207 724.2 422 86.7
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 7.8e-207 723.8 420 87.1
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 7.8e-207 723.8 420 87.1
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 7.8e-207 723.8 420 87.1
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 7.8e-207 723.8 423 86.3
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.0e-206 723.4 420 87.1
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 86.0
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 86.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 2.9e-206 721.8 421 87.2
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 2.9e-206 721.8 421 87.2
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.8e-206 721.5 421 86.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 5.0e-206 721.1 422 86.5
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.6e-206 720.7 422 86.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 6.6e-206 720.7 419 86.6
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 8.6e-206 720.3 420 86.0
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.1e-205 719.9 422 87.0
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 86.5
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 86.2
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.5e-205 718.8 420 86.2
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 431 85.2
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 3.3e-205 718.4 423 85.3
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 4.3e-205 718.0 423 85.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 86.5
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 7.3e-205 717.2 422 86.0
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 7.3e-205 717.2 420 85.5
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 86.2
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.1e-204 715.7 423 85.8
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 85.5
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 85.8
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.7e-204 714.5 419 86.4
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.7e-204 714.5 434 84.8
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.3
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.1e-204 714.1 420 85.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 8.0e-204 713.8 422 86.3
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.0e-203 713.4 422 85.5
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.0e-203 713.4 419 85.9
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.0e-203 713.4 420 85.0
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.4e-203 713.0 471 79.4
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.4e-203 713.0 471 79.4
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.4e-203 713.0 438 84.0
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.8e-203 712.6 420 85.5
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.8e-203 712.6 419 86.6
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 86.1
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 85.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.3e-203 712.2 422 85.8
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 85.8
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 85.8
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 85.8
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 85.2
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 85.5
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 85.8
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 8.9e-203 710.3 419 86.6
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 8.9e-203 710.3 423 85.8
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 8.9e-203 710.3 422 86.5
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-202 709.9 420 85.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.5
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 85.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 85.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 85.7
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.0e-202 709.1 418 85.9
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 85.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.6e-202 708.8 452 82.3
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.6e-202 708.8 423 84.4
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.4e-202 708.4 428 85.5
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 85.1
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 4.4e-202 708.0 431 84.0
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 5.7e-202 707.6 419 84.7
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 5.7e-202 707.6 422 85.3
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 9.8e-202 706.8 423 83.7
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.3e-201 706.4 440 82.7
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.7e-201 706.1 423 84.2
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 84.7
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 85.7
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.9e-201 705.3 422 85.1
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.9e-201 705.3 422 85.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 3.7e-201 704.9 419 84.7
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.7e-201 704.9 423 86.8
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 4.9e-201 704.5 423 84.6
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 6.4e-201 704.1 423 85.3
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.0e-199 699.1 453 81.2
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 4.6e-199 698.0 424 83.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 7.8e-199 697.2 419 83.8
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.0e-198 696.8 423 82.5
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.9e-197 692.6 425 82.8
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 9.5e-197 690.3 423 84.6
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.5e-191 671.8 469 77.4
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.5e-189 665.6 388 86.9
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 9.5e-189 663.7 429 77.9
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.7e-188 661.4 421 81.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.7e-188 661.4 412 82.0
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.0e-187 658.3 502 70.5
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.5e-186 656.4 374 87.4
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 5.4e-184 647.9 378 85.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.2e-183 646.7 389 83.5
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 3.3e-181 638.6 423 80.4
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 6.2e-180 634.4 363 87.6
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.1e-180 634.0 417 79.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.6e-178 629.0 373 83.4
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 5.4e-176 621.3 434 72.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 4.6e-175 618.2 405 76.5
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.5e-170 603.2 415 73.5
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 2.8e-164 582.4 418 70.1
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 5.3e-163 578.2 334 86.2
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.0e-162 576.2 410 73.4
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.9e-157 559.7 310 90.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.1e-147 527.3 396 67.2
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 9.0e-147 524.2 422 64.7
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.5e-144 516.2 396 66.9
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.6e-135 486.9 459 61.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 1.4e-134 483.8 280 88.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 8.2e-132 474.6 391 68.5
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.0e-129 467.6 282 80.9
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 3.4e-122 442.6 260 85.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.5e-117 427.2 243 89.3
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 3.7e-108 396.0 236 81.8
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.6e-101 373.2 225 80.9
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.2e-95 354.4 244 72.1
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.1e-95 352.1 205 85.9
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.7e-84 316.2 288 61.5
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.6e-74 284.3 293 52.6
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 5.2e-70 269.2 207 68.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.6e-63 246.5 147 81.6
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 4.2e-59 233.0 191 60.7
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.5e-53 214.5 134 78.4
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 5.4e-51 206.1 181 66.3
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 3.1e-46 190.3 114 90.4
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 2.6e-45 187.2 119 75.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-41 174.5 150 67.3
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 3.7e-39 166.8 287 36.6
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 7.6e-37 159.1 109 76.1
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.1e-35 155.2 157 59.2
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.4e-35 154.8 157 58.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-28 129.8 178 37.1
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.7e-26 124.0 82 74.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.8e-25 121.3 149 49.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 7.7e-21 105.9 69 76.8
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 7.4e-16 89.4 100 54.0
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.8e-14 84.7 50 92.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 6.9e-14 82.8 49 87.8
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 9.1e-14 82.4 381 28.1
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.4e-11 75.1 40 95.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.5e-11 73.2 221 29.4
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.1e-10 69.7 222 29.7
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 7.9e-10 69.3 37 86.5
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 1.5e-08 65.1 412 23.3
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 2.8e-07 60.8 63 47.6
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 1.8e-06 58.2 319 22.9
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 3.1e-06 57.4 34 82.4


User provided reference genes

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