Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 1.1e-179 633.3 329 100.0
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 2.0e-133 479.6 331 76.7
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 3.2e-131 472.2 338 77.2
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.3e-129 466.8 329 75.7
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 2.8e-127 459.1 333 74.5
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 1.3e-121 440.3 341 69.5
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.7e-121 439.9 333 70.9
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 1.7e-121 439.9 329 73.6
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 2.3e-121 439.5 333 70.9
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 2.3e-121 439.5 333 70.9
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.0e-121 439.1 337 70.9
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 3.9e-121 438.7 333 70.9
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 1.1e-120 437.2 329 73.3
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 1.1e-120 437.2 341 68.9
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.5e-120 436.8 337 69.7
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 5.6e-120 434.9 329 72.6
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 1.6e-119 433.3 338 70.4
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 2.8e-119 432.6 346 69.7
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 2.8e-119 432.6 346 69.7
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 6.2e-119 431.4 340 70.6
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 6.2e-119 431.4 318 73.9
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.4e-118 429.5 338 70.1
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 4.0e-118 428.7 331 71.6
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 5.2e-118 428.3 337 70.0
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 3.4e-117 425.6 342 70.2
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 4.4e-117 425.2 335 70.7
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 4.4e-117 425.2 343 67.1
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 5.8e-117 424.9 337 68.5
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 9.9e-117 424.1 342 68.1
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 9.9e-117 424.1 334 68.6
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 2.2e-116 422.9 269 81.4
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 6.4e-116 421.4 333 68.8
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 6.4e-116 421.4 334 70.1
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 6.4e-116 421.4 330 70.0
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 1.1e-115 420.6 305 74.1
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 1.4e-115 420.2 324 71.6
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 1.4e-115 420.2 311 74.3
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 4.1e-115 418.7 334 69.8
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 7.1e-115 417.9 301 73.4
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 7.1e-115 417.9 339 69.3
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 9.2e-115 417.5 336 68.5
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 9.2e-115 417.5 336 68.5
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.2e-114 417.2 340 67.1
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 1.6e-114 416.8 336 67.9
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.6e-114 416.8 336 68.8
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 2.7e-114 416.0 286 76.9
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 3.5e-114 415.6 286 76.9
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 4.6e-114 415.2 286 76.9
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 6.0e-114 414.8 345 68.7
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 6.0e-114 414.8 330 70.6
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 7.8e-114 414.5 341 68.0
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 1.0e-113 414.1 330 68.2
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 1.3e-113 413.7 328 69.8
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 5.1e-113 411.8 343 67.6
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 5.1e-113 411.8 327 70.9
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 5.1e-113 411.8 346 66.5
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 5.1e-113 411.8 324 69.1
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 8.7e-113 411.0 342 67.8
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 1.1e-112 410.6 337 68.0
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 1.5e-112 410.2 340 66.8
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 1.5e-112 410.2 347 65.4
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 1.9e-112 409.8 341 67.2
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 2.5e-112 409.5 291 73.5
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 3.3e-112 409.1 336 66.4
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 3.3e-112 409.1 339 67.3
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 3.3e-112 409.1 339 67.3
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 4.3e-112 408.7 333 67.3
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 5.6e-112 408.3 350 65.1
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 1.6e-111 406.8 342 67.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 2.8e-111 406.0 286 74.1
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 4.7e-111 405.2 319 69.0
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 1.4e-110 403.7 337 65.6
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.4e-110 403.7 319 69.0
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.4e-110 403.7 333 68.5
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 1.2e-109 400.6 335 69.0
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 2.0e-109 399.8 335 68.1
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 2.0e-109 399.8 299 72.2
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 2.6e-109 399.4 342 64.6
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 4.4e-109 398.7 329 66.9
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 7.6e-109 397.9 344 66.3
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 9.9e-109 397.5 247 82.2
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 1.3e-108 397.1 247 82.2
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 1.4e-107 393.7 297 72.1
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 3.2e-107 392.5 338 64.5
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 4.2e-107 392.1 340 65.3
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 4.2e-107 392.1 338 66.0
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 9.3e-107 391.0 344 64.5
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.2e-106 390.6 254 79.5
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 2.1e-106 389.8 334 65.3
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 3.5e-106 389.0 291 69.4
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 6.0e-106 388.3 294 71.1
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 3.9e-105 385.6 342 63.5
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 1.4e-102 377.1 316 63.9
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 7.6e-101 371.3 242 77.3
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 6.4e-100 368.2 243 77.0
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 1.4e-99 367.1 269 72.9
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 7.9e-98 361.3 254 72.0
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 1.3e-95 354.0 245 73.9
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 4.9e-92 342.0 294 66.0
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 2.7e-90 336.3 211 80.6
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 1.9e-88 330.1 288 65.3
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.9e-88 330.1 216 79.2
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 2.5e-88 329.7 314 57.0
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 4.8e-87 325.5 217 76.0
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 1.5e-85 320.5 262 65.3
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 3.2e-83 312.8 246 65.0
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 1.2e-82 310.8 313 59.7
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 4.6e-82 308.9 294 57.5
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 1.2e-74 284.3 247 57.9
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 2.6e-69 266.5 248 62.9
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 2.8e-63 246.5 216 65.3
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 1.5e-61 240.7 330 46.1
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 1.0e-60 238.0 280 51.4
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 1.4e-57 227.6 187 67.4
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 3.9e-57 226.1 153 74.5
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 5.2e-57 225.7 206 62.1
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 9.7e-56 221.5 194 63.4
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 1.0e-49 201.4 139 72.7
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 4.0e-49 199.5 176 61.4
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 1.3e-47 194.5 258 41.1
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 3.2e-43 179.9 324 40.7
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 3.0e-41 173.3 286 37.8
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 1.7e-39 167.5 248 48.8
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 1.0e-36 158.3 106 73.6
Cre01.g031100 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D007394 1.1e-35 154.8 329 31.9
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 2.5e-35 153.7 143 55.2
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 4.0e-33 146.4 123 65.0
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 2.5e-19 100.5 248 33.1
Cfa009551 Carpinus fangiana HOM05D005410 ORTHO05D007394 9.5e-19 98.6 70 75.7
Ca_17847_v3 Cicer arietinum L. HOM05D005410 ORTHO05D007394 4.7e-18 96.3 68 64.7
Psat7g064520 Pisum sativum HOM05D005410 ORTHO05D007394 7.5e-16 89.0 55 80.0
Psat7g064480 Pisum sativum HOM05D005410 ORTHO05D007394 1.3e-15 88.2 109 48.6
C06p10410 Brassica napus HOM05D005410 ORTHO05D040422 1.7e-15 87.8 77 61.0
BolC6t36118H Brassica oleracea HOM05D005410 ORTHO05D040422 1.7e-15 87.8 77 61.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 2.7e-13 80.5 80 56.2
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 1.1e-11 75.1 122 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 5.6e-11 72.8 83 39.8
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 3.6e-10 70.1 108 36.1
MCO05G137 Micromonas commoda HOM05D005410 ORTHO05D025019 1.8e-09 67.8 129 31.8
ATR0796G057 Amborella trichopoda HOM05D003036 ORTHO05D008712 1.7e-07 61.2 89 36.0
Gorai.007G129100 Gossypium raimondii HOM05D003036 ORTHO05D008712 2.9e-07 60.5 94 36.2
PRCOL_00004687 Prasinoderma coloniale HOM05D003036 ORTHO05D025019 3.7e-07 60.1 107 34.6
Zm00001eb131600 Zea mays HOM05D003036 ORTHO05D008712 3.7e-07 60.1 89 37.1
SMO276G0017 Selaginella moellendorffii HOM05D003036 ORTHO05D008712 8.3e-07 58.9 86 37.2
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 1.1e-06 58.5 109 36.7
Gohir.D11G120400 Gossypium hirsutum HOM05D003036 ORTHO05D008712 1.1e-06 58.5 89 36.0
MBI18_g21837_MAGBIO Magnolia biondii HOM05D003036 ORTHO05D008712 1.1e-06 58.5 89 36.0
Thhalv10009985m.g Eutrema salsugineum HOM05D003036 ORTHO05D008712 1.9e-06 57.8 89 36.0
Gohir.A11G115400 Gossypium hirsutum HOM05D003036 ORTHO05D008712 2.4e-06 57.4 89 36.0
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 2.4e-06 57.4 83 41.0
Duzib138G1578 Durio zibethinus HOM05D003036 ORTHO05D008712 3.2e-06 57.0 89 34.8
Thecc.01G296900 Theobroma cacao HOM05D003036 ORTHO05D008712 3.2e-06 57.0 89 36.0
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 4.1e-06 56.6 70 42.9
THA.LOC104801568 Tarenaya hassleriana HOM05D003036 ORTHO05D008712 5.4e-06 56.2 90 36.7
CBR_g34939 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-06 55.8 93 31.2
Cre10.g439350 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D025019 7.1e-06 55.8 176 31.2
Lalb_Chr18g0047151 Lupinus albus HOM05D003036 ORTHO05D008712 7.1e-06 55.8 89 36.0
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 9.2e-06 55.5 70 41.4
Medtr7g108590 Medicago truncatula HOM05D003036 ORTHO05D008712 9.2e-06 55.5 89 34.8
SalBow3G3623 Salvia bowleyana HOM05D003036 ORTHO05D008712 9.2e-06 55.5 89 33.7


User provided reference genes

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