Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 0.0e+00 1823.1 909 100.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 0.0e+00 1320.1 917 73.3
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 0.0e+00 1308.5 911 73.4
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 0.0e+00 1251.1 925 70.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 0.0e+00 1111.7 926 63.0
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 2.0e-300 1035.8 918 60.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-299 1033.1 896 60.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 3.5e-297 1025.0 755 67.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 6.6e-296 1020.8 906 59.1
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.3e-293 1012.3 954 57.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 2.0e-292 1009.2 892 59.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.6e-292 1008.8 902 57.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 3.4e-292 1008.4 954 57.1
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.4e-291 1004.2 741 67.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 4.1e-290 1001.5 944 57.2
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.1e-289 999.2 901 58.5
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 3.9e-288 995.0 931 56.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.6e-286 988.4 943 55.6
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 8.1e-286 987.3 916 57.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.1e-286 987.3 900 57.8
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.1e-285 986.9 940 56.7
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.1e-285 985.3 965 56.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 8.9e-285 983.8 895 56.9
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-284 983.4 894 58.7
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 9.9e-284 980.3 901 57.3
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.7e-283 979.5 899 57.0
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 6.4e-283 977.6 862 58.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.1e-282 976.9 904 58.1
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-282 976.5 931 56.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.4e-282 976.5 898 57.6
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.4e-282 976.5 958 55.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 4.1e-282 974.9 908 57.2
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 2.1e-281 972.6 926 55.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 6.0e-281 971.1 888 57.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.1e-280 968.0 901 56.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.5e-279 965.7 899 56.7
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 5.6e-279 964.5 967 54.9
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-276 956.4 883 58.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.6e-276 954.1 692 68.6
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.1e-274 950.3 885 55.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-274 949.9 911 57.2
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 3.2e-274 948.7 906 54.3
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 7.1e-274 947.6 917 54.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 7.1e-274 947.6 904 56.2
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.0e-272 942.2 893 54.8
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 7.3e-271 937.6 920 53.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.6e-270 936.4 887 55.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 6.2e-270 934.5 920 53.8
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.1e-269 933.7 902 56.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.6e-268 929.1 921 53.9
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 5.8e-268 927.9 895 54.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.9e-267 925.6 899 54.2
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 8.4e-267 924.1 923 53.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.1e-266 923.7 886 54.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.2e-266 922.2 927 53.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.5e-263 913.3 885 54.1
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.9e-263 912.9 902 53.0
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.3e-263 912.1 888 54.2
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.6e-262 909.8 927 55.0
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.7e-259 899.8 895 52.6
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 6.7e-256 887.9 891 53.3
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-255 887.1 903 53.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.8e-254 882.5 902 52.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.0e-252 876.3 909 50.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 4.5e-252 875.2 897 52.5
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.0e-251 874.0 731 59.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.0e-251 874.0 824 55.6
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 7.1e-250 867.8 888 51.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.1e-249 866.3 742 59.0
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 6.0e-249 864.8 747 58.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.3e-248 862.8 686 61.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 8.7e-248 860.9 906 49.3
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.1e-247 860.5 903 51.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.5e-247 860.1 913 51.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.3e-247 859.0 747 58.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.2e-246 856.3 747 58.4
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 6.3e-246 854.7 763 57.0
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 6.3e-246 854.7 783 55.9
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.3e-243 847.0 903 50.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 6.1e-241 838.2 896 51.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 5.7e-239 831.6 931 51.0
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.4e-234 817.0 918 50.7
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 6.1e-233 811.6 904 48.8
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.0e-227 794.3 553 70.7
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.7e-224 781.6 526 73.4
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.2e-220 770.8 569 65.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.3e-215 752.7 700 54.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 9.1e-213 744.6 775 53.2
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.1e-205 719.5 739 52.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.5e-204 716.1 962 45.7
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.3e-202 709.5 461 74.2
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.5e-194 683.3 897 44.3
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 5.8e-191 672.2 974 40.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.5e-188 662.9 714 51.5
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.9e-182 643.3 483 67.7
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.4e-181 641.0 806 42.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.3e-179 633.6 799 44.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.6e-175 620.2 673 51.6
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-174 617.8 908 40.3
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.9e-171 606.3 691 50.1
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 7.6e-167 592.0 609 51.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-165 585.5 720 43.9
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.9e-159 565.1 746 42.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-146 523.9 746 41.3
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.7e-142 511.1 442 60.2
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.7e-142 511.1 442 60.2
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.6e-138 495.4 483 51.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.5e-135 488.0 313 73.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-135 486.5 865 35.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-130 471.9 602 43.0
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.8e-129 466.5 280 77.1
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.7e-123 446.0 615 41.8
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 7.9e-116 422.5 359 59.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 5.9e-103 379.8 528 44.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.2e-99 366.7 749 33.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.8e-97 360.9 313 62.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.4e-90 337.0 640 36.6
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.5e-85 320.1 430 41.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-82 312.0 409 44.5
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-82 311.6 714 31.5
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.6e-79 302.0 469 39.7
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.1e-77 295.8 652 31.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.9e-77 295.0 160 84.4
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.7e-70 271.9 364 45.6
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-69 269.2 399 41.1
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.8e-67 261.9 274 49.6
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.2e-60 239.2 139 79.9
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.2e-56 223.0 194 54.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 4.7e-52 210.7 714 27.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.2e-50 206.1 394 38.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 3.4e-50 204.5 346 38.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.5e-47 194.5 109 84.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.9e-46 191.0 164 61.0
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-46 190.3 159 56.0
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.1e-43 181.4 628 26.3
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 4.4e-42 177.6 128 71.1
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 4.9e-41 174.1 105 80.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.3e-38 166.0 204 47.5
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-36 158.7 156 57.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.1e-35 154.8 186 43.0
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.3e-33 149.4 297 30.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.1e-28 132.1 86 68.6
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 4.0e-27 127.9 89 66.3
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 7.6e-26 123.6 84 69.0
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.0e-25 123.2 132 51.5
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.9e-24 119.0 84 70.2
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.5e-24 117.5 449 23.8
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.3e-22 112.1 83 69.9
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 3.3e-13 81.6 104 41.3
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.3e-13 81.3 58 63.8
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.8e-12 78.6 199 34.7
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 4.1e-11 74.7 75 50.7
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-08 66.6 176 35.8
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-08 63.9 71 47.9


User provided reference genes

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