Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 0.0e+00 1085.5 624 100.0
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 4.4e-243 844.7 627 78.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.5e-227 793.1 635 71.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 5.5e-225 784.6 628 72.0
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.5e-222 776.5 639 69.3
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 4.8e-213 745.0 663 65.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.0e-206 723.0 658 65.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.5e-201 704.9 609 67.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.8e-199 697.6 639 63.4
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.3e-198 695.7 609 66.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 9.7e-198 694.1 661 62.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.8e-197 692.6 662 62.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 6.3e-197 691.4 608 68.4
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.1e-196 690.6 609 65.4
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.4e-196 690.3 668 62.6
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 3.1e-196 689.1 651 62.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.2e-195 687.2 661 61.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.5e-195 685.3 660 63.8
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-194 684.1 663 61.5
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.3e-194 683.7 665 61.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.2e-194 682.9 659 61.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 2.9e-194 682.6 649 63.6
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 3.8e-194 682.2 649 63.5
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 5.0e-194 681.8 662 61.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.4e-193 680.2 670 62.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.2e-193 679.1 664 61.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 7.2e-193 677.9 664 60.5
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.7e-192 676.0 665 60.2
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.0e-191 674.1 662 60.4
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.0e-191 674.1 662 61.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.0e-191 674.1 665 62.1
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 6.7e-191 671.4 658 62.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 8.8e-191 671.0 663 60.6
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-190 670.6 662 60.3
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.7e-189 666.8 661 59.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.7e-189 666.8 667 58.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.2e-189 666.4 667 60.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 3.7e-189 665.6 663 60.0
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-189 665.6 663 59.4
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.7e-189 665.6 664 64.2
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.7e-189 665.6 664 64.2
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.8e-189 665.2 667 57.9
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-188 663.7 663 59.3
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.8e-188 663.3 667 59.8
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 5.3e-188 661.8 663 59.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 9.1e-188 661.0 598 64.9
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.2e-187 660.6 662 59.2
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.0e-187 659.8 666 59.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.0e-187 659.8 676 59.6
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.9e-187 658.3 664 59.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-186 657.1 663 58.8
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-186 656.8 663 60.2
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.7e-186 656.8 656 60.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.8e-186 655.6 667 58.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.1e-185 654.1 666 59.0
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 5.5e-185 651.7 663 58.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.2e-184 650.6 640 61.4
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.1e-184 649.8 661 58.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.4e-183 647.1 656 58.7
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.3e-183 646.4 665 60.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 4.0e-183 645.6 665 57.7
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 4.4e-182 642.1 656 59.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 4.4e-182 642.1 660 57.7
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.7e-182 641.7 660 57.0
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 7.5e-182 641.3 665 57.9
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.7e-181 640.2 671 60.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.2e-181 639.8 614 63.4
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 6.3e-181 638.3 663 60.8
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 2.9e-178 629.4 663 60.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-178 629.4 671 59.6
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 8.5e-178 627.9 659 59.5
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.5e-177 627.1 655 56.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 4.2e-177 625.5 663 59.3
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 5.5e-177 625.2 669 57.0
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.0e-175 620.9 658 58.5
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 1.2e-174 617.5 659 55.7
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.5e-174 617.1 658 58.2
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 2.0e-174 616.7 658 57.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.6e-174 616.3 648 60.2
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 7.5e-174 614.8 661 55.8
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 7.5e-174 614.8 660 58.6
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-173 613.6 658 60.3
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.7e-173 613.6 658 60.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.8e-173 612.8 539 65.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 4.8e-173 612.1 638 58.6
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 8.3e-173 611.3 658 58.1
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.4e-172 610.5 656 57.9
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.1e-172 609.0 661 55.2
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.2e-171 607.4 676 59.8
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.6e-171 607.1 660 58.3
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.6e-171 607.1 661 55.4
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.0e-171 606.7 654 58.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.7e-170 603.6 656 56.4
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 5.0e-170 602.1 646 58.7
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.6e-170 601.7 661 54.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-169 600.1 650 55.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.3e-169 599.4 661 54.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 4.2e-169 599.0 664 56.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.2e-168 597.4 651 56.5
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.7e-168 595.5 648 56.6
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.0e-168 594.7 638 55.6
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-167 594.0 650 55.8
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 6.8e-167 591.7 662 56.2
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.4e-166 589.3 665 55.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 3.4e-166 589.3 664 55.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.3e-165 587.4 665 54.1
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.3e-165 585.1 657 57.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-162 577.4 666 54.7
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.5e-161 573.2 660 53.3
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 5.6e-161 572.0 601 56.4
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.6e-160 569.3 665 52.0
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.7e-160 568.9 651 55.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.7e-160 568.9 649 55.5
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.5e-158 563.9 661 56.1
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 9.8e-158 561.2 664 54.2
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-157 560.8 619 55.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.7e-157 559.3 652 55.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-156 557.8 547 59.8
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-156 557.8 547 59.8
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.2e-155 554.3 649 55.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.0e-155 553.5 656 52.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 7.3e-153 545.0 657 53.6
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 9.5e-153 544.7 646 53.1
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-152 543.9 667 50.8
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.2e-151 538.9 656 53.0
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.8e-151 538.5 666 51.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.0e-150 537.0 648 52.6
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.4e-150 536.2 659 54.0
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.3e-149 534.3 666 50.8
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-147 527.3 640 53.8
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.9e-145 520.4 641 50.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.9e-145 520.4 680 49.4
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-143 514.2 658 50.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 4.0e-143 512.7 581 54.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.4e-142 509.6 653 49.6
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.9e-141 506.5 625 51.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.9e-141 506.5 664 50.2
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.7e-141 506.1 684 48.2
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-139 500.7 655 49.2
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 6.0e-139 498.8 661 49.0
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.5e-137 494.2 668 48.2
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.2e-136 488.8 638 52.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 8.1e-136 488.4 650 48.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.2e-133 480.3 645 51.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.2e-132 476.1 655 47.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 9.6e-129 464.9 515 56.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 9.6e-129 464.9 667 46.9
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.3e-112 411.4 601 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 2.8e-112 410.2 655 44.4
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 6.9e-111 405.6 616 45.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 8.7e-98 362.1 406 56.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.2e-91 341.7 424 52.6
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 3.0e-90 337.0 401 51.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 6.7e-90 335.9 627 43.7
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 7.2e-84 315.8 399 49.6
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.2e-84 315.8 653 38.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.7e-83 313.9 535 42.4
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-81 308.5 641 38.2
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.1e-76 292.0 372 47.8
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.6e-75 288.1 313 55.3
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.8e-74 284.6 223 71.3
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-70 271.6 292 53.8
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 5.5e-60 236.5 647 32.6
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.6e-51 208.4 269 45.0
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 4.9e-32 143.7 78 89.7
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.9e-31 141.7 113 60.2
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 4.0e-26 124.0 147 52.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.9e-24 117.9 221 48.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.7e-24 117.5 383 26.9
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.9e-24 117.1 109 53.2
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.6e-22 110.5 106 60.4
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-18 97.4 74 66.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 7.6e-17 93.2 125 46.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-16 92.4 78 66.7
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-15 89.0 61 65.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-11 75.9 60 61.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.6e-11 75.5 600 23.2
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.1e-07 62.8 80 58.8
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 3.2e-07 61.2 83 68.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.4e-07 60.5 397 23.7


User provided reference genes

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