Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 5.4e-179 631.7 570 100.0
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.2e-116 423.7 337 65.9
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.1e-110 404.8 337 63.2
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 3.6e-106 389.8 337 62.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 1.8e-105 387.5 337 62.0
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.3e-105 387.1 337 61.4
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.3e-105 387.1 337 61.4
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 1.7e-103 380.9 331 61.9
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.2e-103 380.6 337 61.1
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.4e-102 377.9 337 60.8
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 6.5e-100 369.0 305 64.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 6.1e-98 362.5 343 57.4
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 2.3e-97 360.5 334 59.3
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.2e-96 358.2 337 57.3
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 1.2e-96 358.2 337 57.0
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.3e-95 354.8 337 57.3
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.2e-95 354.0 337 57.6
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.8e-95 353.6 306 61.4
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 2.8e-95 353.6 337 57.6
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.7e-95 353.2 306 61.4
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.8e-95 352.8 334 58.1
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 6.3e-95 352.4 304 60.9
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 7.0e-94 349.0 302 60.9
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 9.1e-94 348.6 337 57.9
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.7e-93 347.1 337 56.7
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 2.7e-93 347.1 309 60.5
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.7e-93 347.1 296 60.5
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.7e-93 347.1 332 55.4
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 2.9e-92 343.6 337 54.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 1.9e-91 340.9 338 56.2
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 2.5e-91 340.5 337 56.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 4.2e-91 339.7 316 57.3
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 5.5e-91 339.3 304 58.9
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.2e-90 338.2 273 63.4
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.6e-90 337.8 306 59.2
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 2.1e-90 337.4 329 55.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 4.7e-90 336.3 306 59.2
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 8.0e-90 335.5 353 52.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 8.0e-90 335.5 306 58.2
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.0e-89 335.1 297 59.3
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 4.0e-89 333.2 332 54.2
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 8.8e-89 332.0 337 55.2
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.5e-88 331.3 305 58.7
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 9.8e-88 328.6 335 54.6
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.3e-87 328.2 305 59.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 2.2e-87 327.4 335 54.0
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 4.9e-87 326.2 335 53.7
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 6.3e-87 325.9 335 54.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 8.3e-87 325.5 335 54.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 1.1e-86 325.1 335 54.3
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.1e-86 325.1 305 58.0
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.4e-86 324.7 305 57.7
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 3.1e-86 323.6 309 55.0
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 4.1e-86 323.2 316 55.7
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 4.1e-86 323.2 295 59.0
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 4.1e-86 323.2 301 60.5
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.2e-85 321.6 295 57.3
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 3.5e-85 320.1 303 57.4
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 4.5e-85 319.7 327 54.4
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 7.8e-85 318.9 299 57.2
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.0e-84 318.5 295 57.6
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.3e-84 318.2 296 57.4
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.3e-84 318.2 343 52.8
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-84 317.8 331 53.8
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.7e-84 317.8 295 57.6
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.3e-84 317.4 331 54.1
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 2.3e-84 317.4 331 52.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.9e-84 317.0 337 53.7
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 6.6e-84 315.8 337 53.4
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 6.6e-84 315.8 295 57.3
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 8.6e-84 315.5 337 53.4
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 1.1e-83 315.1 303 55.1
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.5e-83 314.7 325 52.3
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.9e-83 314.3 298 57.4
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 2.5e-83 313.9 306 53.9
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 5.6e-83 312.8 337 51.9
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 2.8e-82 310.5 304 55.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 4.7e-82 309.7 321 52.3
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 6.1e-82 309.3 245 64.1
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 6.1e-82 309.3 325 53.2
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.0e-81 308.5 341 51.9
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.0e-81 306.6 337 51.3
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.0e-80 304.3 299 55.5
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 3.4e-80 303.5 325 51.7
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 4.1e-78 296.6 324 50.9
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 6.6e-76 289.3 303 52.1
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 8.6e-76 288.9 335 49.6
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.5e-75 288.1 335 49.9
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 7.3e-75 285.8 335 49.6
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 2.6e-72 277.3 310 51.0
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.6e-72 277.3 335 48.1
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 8.3e-71 272.3 311 49.5
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 2.7e-69 267.3 339 48.1
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 3.5e-69 266.9 293 51.9
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 6.8e-65 252.7 291 48.8
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.1e-62 245.4 292 47.6
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 1.1e-59 235.3 163 71.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 4.0e-57 226.9 320 43.4
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 6.2e-50 203.0 211 53.6
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.0e-48 198.0 115 80.0
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 2.6e-48 197.6 153 66.7
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 4.2e-46 190.3 150 64.7
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 9.6e-43 179.1 150 60.0
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 3.6e-42 177.2 114 76.3
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 9.0e-41 172.6 243 43.6
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.2e-40 172.2 196 51.0
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-37 162.2 126 65.9
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.5e-29 134.0 262 33.6
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 3.3e-27 127.5 155 48.4
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.3e-26 125.6 261 31.4
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 3.4e-24 117.5 266 27.8
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 1.1e-22 112.5 82 65.9
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 2.1e-21 108.2 74 71.6
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 2.5e-19 101.3 77 63.6
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.8e-12 78.6 77 54.5
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 3.4e-08 64.3 169 25.4
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 1.0e-07 62.8 169 25.4
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 5.0e-07 60.5 169 24.3
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 6.5e-07 60.1 48 54.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.5e-07 60.1 113 28.3
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 8.5e-07 59.7 172 26.2
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 8.5e-07 59.7 169 24.9
Nitab4.5_0002158g0120 Nicotiana tabacum HOM05D000300 ORTHO05D000383 8.5e-07 59.7 167 24.6
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.4e-06 58.9 113 27.4
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.9e-06 58.5 170 25.9
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 3.2e-06 57.8 153 24.8
CAN.G1164.20 Capsicum annuum HOM05D000300 ORTHO05D000383 4.2e-06 57.4 167 26.3
Solyc12g098990.2 Solanum lycopersicum HOM05D001779 ORTHO05D001753 5.5e-06 57.0 184 25.5
Sopen12g033730 Solanum pennellii HOM05D001779 ORTHO05D001753 5.5e-06 57.0 170 25.9
PGSC0003DMG400004604 Solanum tuberosum HOM05D001779 ORTHO05D001753 5.5e-06 57.0 184 25.0
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 7.2e-06 56.6 132 25.0
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 7.2e-06 56.6 31 90.3
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 9.4e-06 56.2 31 87.1


User provided reference genes

Program Settings