Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 0.0e+00 1535.4 813 100.0
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 0.0e+00 1120.5 834 70.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 0.0e+00 1119.0 822 72.5
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 0.0e+00 1085.9 835 68.6
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.3e-266 923.3 829 60.3
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.7e-266 921.8 793 63.9
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.6e-264 916.4 829 59.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.2e-261 906.7 837 59.1
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.7e-261 904.8 876 57.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.6e-259 899.0 834 59.0
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.1e-257 893.6 838 59.5
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.9e-257 892.9 838 59.2
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.1e-256 889.4 835 57.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.9e-254 882.9 840 60.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 5.6e-254 881.3 831 58.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.6e-254 881.3 837 58.4
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 6.4e-250 867.8 823 59.2
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.2e-249 865.5 832 57.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.1e-248 862.8 832 56.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.7e-248 862.4 848 58.0
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 3.0e-247 859.0 838 57.9
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.5e-246 856.7 831 56.9
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.6e-245 852.0 829 57.1
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.1e-245 850.9 833 57.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 3.1e-244 849.0 832 56.6
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.0e-244 848.6 831 56.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 5.2e-244 848.2 821 59.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 6.8e-244 847.8 824 57.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.0e-243 846.3 828 57.1
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.4e-241 840.1 805 57.9
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-241 839.7 836 55.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-241 839.3 726 62.3
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.2e-241 839.0 837 57.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-241 838.2 828 56.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.6e-240 836.6 808 57.3
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.1e-240 836.3 838 56.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.5e-240 835.5 820 57.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.5e-240 835.5 837 56.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-238 830.5 836 55.3
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.9e-238 829.7 828 58.1
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.5e-238 829.3 822 57.9
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.3e-238 828.6 840 56.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.4e-235 818.9 831 56.7
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 9.3e-233 810.8 832 54.7
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 9.3e-233 810.8 808 57.2
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.7e-232 809.3 853 54.3
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.0e-231 807.4 606 71.5
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-230 803.9 806 56.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 6.2e-229 798.1 885 53.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.5e-227 793.5 830 54.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.7e-226 790.0 795 56.9
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.9e-226 789.3 817 55.6
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.1e-225 787.3 790 57.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.9e-225 786.6 806 55.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.0e-223 780.8 808 56.8
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.8e-223 780.0 741 59.6
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.3e-222 775.8 806 54.6
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.4e-222 774.6 843 53.6
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 4.0e-220 768.8 833 54.6
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 9.0e-220 767.7 827 53.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.5e-219 766.9 827 52.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.8e-219 765.0 986 48.3
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.9e-214 750.0 828 53.4
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.8e-212 743.4 831 53.9
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 7.6e-211 738.0 825 52.6
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.1e-209 734.2 776 55.5
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 9.3e-209 731.1 810 53.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-208 730.7 825 52.6
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.6e-208 730.3 806 52.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.8e-207 726.9 787 54.4
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 8.7e-207 724.5 883 50.8
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.5e-206 723.8 644 62.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.3e-206 722.6 772 53.9
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.6e-200 703.7 646 60.1
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.1e-200 703.4 807 51.5
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.6e-200 702.2 828 50.5
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 7.9e-200 701.4 820 52.7
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.8e-199 700.3 811 52.4
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.3e-198 696.0 1041 44.6
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.7e-197 692.6 595 63.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 8.2e-197 691.4 651 59.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 3.8e-194 682.6 831 50.1
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 2.5e-193 679.9 825 49.8
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 7.9e-192 674.9 466 73.4
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.8e-191 673.7 542 65.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.0e-191 672.9 842 49.3
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.1e-191 672.2 646 58.0
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.5e-190 670.6 831 48.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-190 670.2 828 48.2
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 2.0e-190 670.2 824 48.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.0e-190 670.2 762 53.7
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.7e-189 666.0 646 58.0
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 6.3e-189 665.2 841 49.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 9.1e-188 661.4 813 49.0
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 5.9e-187 658.7 560 62.5
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 7.7e-187 658.3 663 57.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 7.7e-187 658.3 660 57.0
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 7.7e-187 658.3 672 56.5
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.7e-186 657.1 665 56.8
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.7e-186 657.1 825 47.5
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 5.5e-185 652.1 825 49.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 5.3e-180 635.6 808 48.4
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.2e-176 624.4 839 47.9
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.7e-173 614.0 405 77.5
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-172 610.9 413 73.8
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 8.5e-170 601.7 788 47.6
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.2e-169 599.4 721 49.7
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.0e-167 594.7 720 49.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.5e-155 552.7 648 51.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 8.0e-152 542.0 391 68.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.1e-148 531.6 344 73.8
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.1e-148 529.6 361 70.9
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.3e-146 523.9 344 73.8
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.3e-145 519.6 810 42.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 8.0e-144 515.4 361 69.3
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-141 507.7 300 81.7
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.9e-140 504.2 677 47.1
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 9.2e-140 501.9 451 58.5
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.5e-139 500.0 361 67.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-136 490.7 383 64.2
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.1e-135 486.9 487 52.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 4.0e-135 486.5 777 42.7
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 5.2e-135 486.1 477 59.7
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.9e-132 477.6 352 65.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.0e-130 471.9 413 60.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 1.5e-129 468.0 380 62.6
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.3e-124 448.7 421 54.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.8e-120 436.4 367 62.1
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.0e-119 433.3 657 43.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 2.6e-118 430.6 319 66.8
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.4e-117 426.0 431 52.9
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.7e-114 417.9 478 49.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.5e-113 414.1 279 71.7
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.8e-111 407.9 441 50.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.8e-110 402.9 589 39.2
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.9e-108 397.9 535 45.2
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 2.1e-104 384.4 446 48.9
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.0e-103 379.0 655 42.1
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 7.6e-102 375.9 468 48.7
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.0e-98 365.5 448 48.2
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-97 362.1 241 75.9
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.3e-90 338.6 580 44.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.6e-88 331.6 198 85.4
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.6e-86 324.3 479 51.6
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.6e-83 313.9 484 43.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 7.9e-83 312.8 586 37.5
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.5e-81 308.5 475 43.8
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-72 278.9 270 55.2
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.3e-72 278.9 317 45.1
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.0e-71 273.1 191 68.6
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 6.5e-69 266.5 382 45.5
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 6.5e-69 266.5 424 42.0
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.3e-64 252.3 417 37.4
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-62 245.7 481 40.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 8.5e-61 239.6 184 63.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 6.8e-58 229.9 347 38.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.0e-57 228.4 184 64.7
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-54 218.4 364 40.4
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-52 212.2 181 59.1
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 8.0e-51 206.5 153 62.7
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 8.3e-48 196.4 149 63.8
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.9e-46 190.3 476 37.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.7e-46 189.9 471 36.5
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.3e-45 189.1 101 89.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.3e-45 189.1 375 35.2
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 2.5e-44 184.9 320 35.0
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.3e-36 157.9 85 84.7
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 4.1e-23 114.4 215 39.1
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 4.6e-22 110.9 64 81.2
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-20 105.9 65 78.5
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-20 104.8 176 40.9
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 7.3e-20 103.6 66 75.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 8.1e-19 100.1 65 72.3
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.6e-14 85.9 59 67.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 7.8e-14 83.6 194 35.6
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.4e-09 68.2 47 68.1
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 4.4e-09 67.8 52 65.4
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.7e-08 65.9 59 57.6
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-07 63.2 56 60.7
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-07 62.4 39 79.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.2e-07 61.2 47 66.0


User provided reference genes

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