Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00644 Erythranthe guttata HOM05D005236 ORTHO05D006557 5.5e-300 1033.5 508 100.0
Migut.L00833 Erythranthe guttata HOM05D005236 ORTHO05D006557 2.6e-297 1024.6 508 99.2
MSTRG.7621 Avicennia marina HOM05D005236 ORTHO05D006557 2.9e-216 755.4 507 74.0
SalBow8G3693 Salvia bowleyana HOM05D005236 ORTHO05D006557 1.9e-191 672.9 515 67.0
SalBow8G4798 Salvia bowleyana HOM05D005236 ORTHO05D006557 1.9e-191 672.9 515 67.0
SGA_v2.0_scaffold50G18498 Striga asiatica HOM05D005236 ORTHO05D006557 2.0e-177 626.3 513 63.9
Dinv14429 Davidia involucrata HOM05D005236 ORTHO05D006557 2.9e-160 569.3 515 57.9
CSS0043470 Camellia sinensis var. sinensis HOM05D005236 ORTHO05D006557 1.2e-142 510.8 527 50.7
TAR622G0787 Trochodendron aralioides HOM05D005236 ORTHO05D006557 1.0e-141 507.7 527 51.4
Cc11_g08660 Coffea canephora HOM05D005236 ORTHO05D006557 6.6e-136 488.4 508 51.2
Sopen05g003880 Solanum pennellii HOM05D005236 ORTHO05D006557 4.3e-135 485.7 535 49.0
Thecc.02G282100 Theobroma cacao HOM05D005236 ORTHO05D006557 4.7e-134 482.3 555 48.8
GSVIVG01011753001 Vitis vinifera HOM05D005236 ORTHO05D006557 1.8e-133 480.3 519 50.7
FvH4_4g32470 Fragaria vesca HOM05D005236 ORTHO05D006557 7.5e-132 474.9 513 48.7
CAN.G1298.25 Capsicum annuum HOM05D005236 ORTHO05D006557 1.7e-131 473.8 537 47.9
FAN22G1445 Fragaria x ananassa HOM05D005236 ORTHO05D006557 8.3e-131 471.5 512 48.6
Nitab4.5_0000742g0190 Nicotiana tabacum HOM05D005236 ORTHO05D006557 8.3e-131 471.5 523 49.5
RcHm_v2.0_Chr4g0441331 Rosa chinensis HOM05D005236 ORTHO05D006557 1.1e-130 471.1 520 48.7
FAN17G1995 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.9e-130 470.3 512 48.8
Gorai.005G161600 Gossypium raimondii HOM05D005236 ORTHO05D006557 9.2e-130 468.0 553 48.8
Actinidia13577 Actinidia chinensis HOM05D005236 ORTHO05D006557 2.7e-129 466.5 412 58.5
Duzib251G0654 Durio zibethinus HOM05D005236 ORTHO05D006557 2.7e-129 466.5 587 45.0
Gohir.D02G144400 Gossypium hirsutum HOM05D005236 ORTHO05D006557 1.7e-128 463.8 549 48.6
Gohir.A03G121000 Gossypium hirsutum HOM05D005236 ORTHO05D006557 3.6e-126 456.1 544 48.3
TWI79G0143 Tripterygium wilfordii HOM05D005236 ORTHO05D006557 1.1e-125 454.5 508 49.4
Manes.15G127900 Manihot esculenta HOM05D005236 ORTHO05D006557 1.2e-124 451.1 533 48.2
MBI10_g08556_MAGBIO Magnolia biondii HOM05D005236 ORTHO05D006557 1.5e-124 450.7 529 47.1
MD16G1027600 Malus domestica HOM05D005236 ORTHO05D006557 3.4e-124 449.5 508 47.2
FAN07G1852 Fragaria x ananassa HOM05D005236 ORTHO05D006557 2.9e-123 446.4 500 47.8
Lalb_Chr10g0096161 Lupinus albus HOM05D005236 ORTHO05D006557 2.9e-123 446.4 514 46.9
Potri.010G112500 Populus trichocarpa HOM05D005236 ORTHO05D006557 8.3e-123 444.9 529 47.4
Sed0013091 Sechium edule HOM05D005236 ORTHO05D006557 1.9e-122 443.7 515 47.8
CANSAT64G0788 Cannabis sativa HOM05D005236 ORTHO05D006557 5.4e-122 442.2 512 47.5
Sc14g0007110 Simmondsia chinensis HOM05D005236 ORTHO05D006557 2.1e-121 440.3 510 47.6
Lj2g0001419 Lotus japonicus HOM05D005236 ORTHO05D006557 2.7e-121 439.9 509 48.7
MD13G1025100 Malus domestica HOM05D005236 ORTHO05D006557 2.7e-121 439.9 508 47.6
Phvul.003G032801 Phaseolus vulgaris HOM05D005236 ORTHO05D006557 3.5e-121 439.5 483 49.5
AL5G10420 Arabidopsis lyrata HOM05D005236 ORTHO05D006557 2.5e-119 433.3 522 46.0
CARHR143960 Cardamine hirsuta HOM05D005236 ORTHO05D006557 3.3e-119 433.0 515 47.2
Aa31LG2G8500 Aethionema arabicum HOM05D005236 ORTHO05D006557 4.3e-119 432.6 497 47.5
CiPaw.05G250200 Carya illinoinensis HOM05D005236 ORTHO05D006557 4.3e-119 432.6 428 53.0
Carub.0005s0040 Capsella rubella HOM05D005236 ORTHO05D006557 9.6e-119 431.4 515 45.8
TPR.G36938 Trifolium pratense HOM05D005236 ORTHO05D006557 9.6e-119 431.4 510 46.7
AT2G01440 Arabidopsis thaliana HOM05D005236 ORTHO05D006557 1.6e-118 430.6 511 46.4
Ciclev10017747m.g Citrus clementina HOM05D005236 ORTHO05D006557 6.2e-118 428.7 406 54.9
Psat6g043400 Pisum sativum HOM05D005236 ORTHO05D006557 2.2e-115 420.2 508 46.3
Lsat_1_v5_gn_3_54941 Lactuca sativa HOM05D005236 ORTHO05D006557 4.9e-115 419.1 474 48.5
Prupe.1G325100 Prunus persica HOM05D005236 ORTHO05D006557 1.1e-114 417.9 489 47.4
HanXRQChr15g0484551 Helianthus annuus HOM05D005236 ORTHO05D006557 9.3e-114 414.8 479 47.8
C07p31870 Brassica napus HOM05D005236 ORTHO05D006557 1.2e-113 414.5 506 46.8
Aqoxy3G00124 Aquilegia oxysepala HOM05D005236 ORTHO05D006557 1.6e-113 414.1 522 43.9
BolC7t43733H Brassica oleracea HOM05D005236 ORTHO05D006557 4.6e-113 412.5 505 46.7
Medtr1g031140 Medicago truncatula HOM05D005236 ORTHO05D006557 1.7e-112 410.6 506 47.2
Eucgr.G02185 Eucalyptus grandis HOM05D005236 ORTHO05D006557 3.0e-112 409.8 412 53.2
arahy.Tifrunner.gnm1.ann1.X3V98R Arachis hypogaea HOM05D005236 ORTHO05D006557 3.9e-112 409.5 516 44.6
MELO3C018322.2 Cucumis melo HOM05D005236 ORTHO05D006557 3.9e-112 409.5 501 45.5
FAN12G1300 Fragaria x ananassa HOM05D005236 ORTHO05D006557 5.1e-112 409.1 527 43.8
Sp2g12880 Schrenkiella parvula HOM05D005236 ORTHO05D006557 5.1e-112 409.1 516 45.0
ECA246G1132 Erigeron canadensis HOM05D005236 ORTHO05D006557 9.6e-111 404.8 477 47.2
CsaV3_5G013670 Cucumis sativus L. HOM05D005236 ORTHO05D006557 1.6e-110 404.1 516 45.0
DCAR_007297 Daucus carota HOM05D005236 ORTHO05D006557 1.6e-110 404.1 535 42.6
A06p44440 Brassica napus HOM05D005236 ORTHO05D006557 2.8e-110 403.3 504 45.6
Thhalv10000760m.g Eutrema salsugineum HOM05D005236 ORTHO05D006557 3.6e-110 402.9 516 44.6
ATR0598G134 Amborella trichopoda HOM05D005236 ORTHO05D006557 6.2e-110 402.1 545 42.0
BraA06t27318Z Brassica rapa HOM05D005236 ORTHO05D006557 8.1e-110 401.7 504 45.4
AUR62038508 Chenopodium quinoa HOM05D005236 ORTHO05D006557 2.9e-107 393.3 490 45.5
arahy.Tifrunner.gnm1.ann1.KH05JX Arachis hypogaea HOM05D005236 ORTHO05D006557 4.9e-107 392.5 550 41.8
Ah.03g137280 Amaranthus hybridus HOM05D005236 ORTHO05D006557 3.5e-105 386.3 513 43.7
Atru.chr11.574_Atru.chr11.575 Acer truncatum HOM05D005236 ORTHO05D006557 5.8e-100 369.0 446 46.9
EL10Ac6g14212 Beta vulgaris HOM05D005236 ORTHO05D006557 2.9e-99 366.7 584 39.0
Lj3C872G3 Lonicera japonica HOM05D005236 ORTHO05D006557 1.4e-98 364.4 546 43.0
PSO017G4096 Papaver somniferum HOM05D005236 ORTHO05D006557 5.4e-98 362.5 554 38.8
BcaC06g34177 Brassica carinata HOM05D005236 ORTHO05D006557 1.3e-88 331.3 506 41.3
unitig_52.g17382 Utricularia gibba HOM05D005236 ORTHO05D006557 6.5e-83 312.4 439 41.0
Zm00001eb252400 Zea mays HOM05D005236 ORTHO05D006557 4.2e-82 309.7 493 38.7
Peaxi162Scf00159g00079 Petunia axillaris HOM05D005236 ORTHO05D006557 2.5e-71 273.9 223 58.3
HPP92_000274 Vanilla planifolia HOM05D005236 ORTHO05D006557 9.7e-71 271.9 437 38.7
Rhsim09G0066900 Rhododendron simsii HOM05D005236 ORTHO05D006557 3.7e-70 270.0 220 59.1
AUR62014142 Chenopodium quinoa HOM05D005236 ORTHO05D006557 2.1e-65 254.2 384 40.4
Pp3c19_21980 Physcomitrium patens HOM05D005236 ORTHO05D006557 7.7e-60 235.7 273 43.6
SMO200G0115 Selaginella moellendorffii HOM05D005236 ORTHO05D006557 1.4e-53 214.9 294 39.1
Oeu003384.3 Olea europaea HOM05D005236 ORTHO05D006557 2.4e-53 214.2 136 72.8
AagrBONN_evm.TU.Sc2ySwM_368.2128 Anthoceros agrestis HOM05D005236 ORTHO05D006557 4.1e-53 213.4 290 37.9
Mapoly0024s0015 Marchantia polymorpha HOM05D005236 ORTHO05D006557 1.5e-50 204.9 343 34.4
Glyma.07G164900 Glycine max HOM05D005236 ORTHO05D006557 1.8e-48 198.0 300 41.3
Haze_11000 Corylus avellana HOM05D005236 ORTHO05D006557 1.7e-46 191.4 143 62.9
Nn4g24162 Nelumbo nucifera HOM05D005236 ORTHO05D006557 4.8e-46 189.9 135 63.0
Medtr3g079915 Medicago truncatula HOM05D005236 ORTHO05D006557 1.3e-43 181.8 136 62.5
Rhsim09G0066800 Rhododendron simsii HOM05D005236 ORTHO05D006557 7.5e-39 166.0 242 42.6
Hund24974 Selenicereus undatus HOM05D005236 ORTHO05D006557 1.6e-33 148.3 270 36.3
Peaxi162Scf00159g00077 Petunia axillaris HOM05D005236 ORTHO05D006557 8.0e-33 146.0 261 36.0
Hma1.2p1_0096F.1_g047840 Hydrangea macrophylla HOM05D005236 ORTHO05D006557 1.8e-29 134.8 222 40.1
Glyma.07G164800 Glycine max HOM05D005236 ORTHO05D006557 2.7e-28 131.0 126 50.0
SEGI_25716 Sequoiadendron giganteum HOM05D005236 ORTHO05D006557 3.5e-28 130.6 179 39.1
BcaC06g31307 Brassica carinata HOM05D005236 ORTHO05D006557 1.0e-27 129.0 280 34.6
ClCG07G006500 Citrullus lanatus HOM05D005236 ORTHO05D006557 8.0e-25 119.4 254 32.3
ClCG07G006520 Citrullus lanatus HOM05D005236 ORTHO05D006557 4.4e-23 113.6 88 61.4
AUR62014143 Chenopodium quinoa HOM05D005236 ORTHO05D006557 4.9e-22 110.2 78 61.5
Solyc05g008030.1 Solanum lycopersicum HOM05D005236 ORTHO05D006557 1.7e-19 101.7 186 36.6
FAN10G0964 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.5e-15 88.6 57 68.4
FAN28G2148 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.5e-15 88.6 57 68.4
Ca_12599_v3 Cicer arietinum L. HOM05D005236 ORTHO05D006557 9.2e-13 79.3 230 29.1
Solyc05g008040.4 Solanum lycopersicum HOM05D005236 ORTHO05D006557 2.3e-11 74.7 47 70.2
COL.COLO4_20489 Corchorus olitorius HOM05D005236 ORTHO05D006557 7.3e-10 69.7 240 26.7
Hma1.2p1_0096F.1_g047830 Hydrangea macrophylla HOM05D005236 ORTHO05D006557 4.7e-09 67.0 72 45.8
PGSC0003DMG401030493 Solanum tuberosum HOM05D005236 ORTHO05D006557 5.8e-07 60.1 62 50.0
Medtr3g079925 Medicago truncatula HOM05D005236 ORTHO05D006557 9.9e-07 59.3 109 34.9
Sabra08G0098300 Salix brachista HOM05D005236 ORTHO05D050538 2.2e-06 58.2 84 42.9


User provided reference genes

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