Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.7e-258 894.8 443 100.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.6e-255 885.6 445 98.9
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.3e-238 828.6 443 93.9
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.4e-237 824.7 443 93.7
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.9e-220 767.7 443 84.7
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.1e-218 762.3 443 83.5
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.7e-217 759.2 443 83.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 6.0e-210 734.2 443 80.6
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.2e-204 715.7 443 77.9
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.9e-203 712.6 443 77.7
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 5.4e-203 711.1 443 77.0
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.3e-203 710.3 443 77.7
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 8.7e-201 703.7 443 76.1
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 3.3e-200 701.8 443 77.0
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 3.7e-199 698.4 443 76.1
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.1e-198 696.8 443 75.2
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.4e-198 695.7 443 76.1
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 6.9e-198 694.1 443 77.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.1e-195 686.8 443 75.6
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.4e-195 686.4 443 74.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.5e-195 684.5 443 73.6
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 9.3e-195 683.7 442 74.4
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.1e-194 682.6 443 73.6
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.5e-194 681.8 443 74.3
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 3.5e-194 681.8 443 74.9
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 7.9e-194 680.6 442 74.2
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.0e-193 680.2 443 74.3
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.8e-193 679.5 443 73.8
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 6.7e-193 677.6 443 74.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.9e-192 676.0 443 74.7
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.9e-192 676.0 443 74.9
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 1.9e-192 676.0 421 77.7
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.9e-192 676.0 444 73.6
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 4.3e-192 674.9 422 76.5
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 7.4e-192 674.1 443 74.0
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 9.6e-192 673.7 443 74.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 9.6e-192 673.7 456 72.6
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.3e-191 673.3 443 73.8
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.3e-191 673.3 443 74.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.3e-191 673.3 458 72.9
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 4.8e-191 671.4 443 73.4
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.4e-190 669.8 442 73.5
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.8e-190 669.5 447 72.5
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 3.1e-190 668.7 470 69.4
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.1e-190 668.7 443 72.0
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 3.1e-190 668.7 443 72.9
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.1e-190 668.7 442 73.8
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 4.0e-190 668.3 443 74.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 6.9e-190 667.5 443 72.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 9.0e-190 667.2 465 70.3
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.5e-189 666.4 492 67.9
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.9e-188 662.1 442 72.9
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.8e-188 661.8 440 73.2
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 4.9e-188 661.4 443 72.9
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.5e-188 661.0 443 72.7
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.4e-187 659.8 443 72.7
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 5.5e-187 657.9 443 72.7
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 3.5e-186 655.2 443 70.9
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 3.5e-186 655.2 453 70.2
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.5e-186 655.2 453 70.2
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 3.5e-186 655.2 443 71.8
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.6e-186 654.8 446 72.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 7.9e-186 654.1 420 76.2
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.0e-185 653.7 453 70.6
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.8e-185 652.9 453 70.2
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 3.0e-185 652.1 453 70.2
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 3.3e-184 648.7 449 70.8
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 5.7e-184 647.9 453 70.4
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 5.7e-184 647.9 453 70.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.6e-183 646.4 443 70.0
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.1e-182 643.7 453 69.8
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.4e-182 643.3 453 70.0
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.8e-182 642.9 453 69.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 9.0e-182 640.6 443 71.1
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 9.0e-182 640.6 443 71.1
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.2e-181 640.2 450 68.4
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.2e-181 640.2 443 70.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.5e-181 639.8 449 70.2
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 2.6e-181 639.0 443 70.7
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 3.4e-181 638.6 443 70.9
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.3e-180 636.7 443 72.0
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.1e-179 633.6 453 68.7
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 3.2e-179 632.1 441 70.3
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 4.2e-179 631.7 455 68.6
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.2e-179 631.7 454 68.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.9e-178 627.5 448 69.4
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 2.5e-176 622.5 443 70.4
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 2.5e-176 622.5 444 69.1
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.7e-176 621.3 443 70.9
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 5.3e-174 614.8 580 57.1
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 9.1e-174 614.0 454 67.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.2e-173 613.6 443 68.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.3e-172 610.1 443 67.0
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.1e-171 607.1 454 66.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 1.4e-171 606.7 432 69.2
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.2e-171 605.1 448 69.4
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 4.4e-168 595.1 481 63.6
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 2.4e-166 589.3 446 66.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 5.0e-164 581.6 443 66.4
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-161 573.5 447 66.2
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.1e-160 570.5 433 67.4
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 9.7e-160 567.4 447 65.5
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 9.7e-160 567.4 446 64.1
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 3.7e-159 565.5 453 63.8
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 6.3e-159 564.7 447 64.0
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.2e-157 560.5 454 64.1
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.2e-157 560.5 451 63.9
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 5.0e-156 555.1 443 64.8
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 6.5e-156 554.7 451 63.0
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 3.6e-154 548.9 454 62.3
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 4.4e-152 542.0 462 60.2
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 5.7e-152 541.6 361 72.3
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.7e-151 540.0 408 66.7
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.1e-150 535.4 400 67.8
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.5e-149 532.3 454 61.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 6.1e-146 521.5 447 61.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 5.2e-145 518.5 336 76.5
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.4e-142 509.6 325 76.6
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.5e-139 500.4 381 66.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 8.0e-138 494.6 582 50.2
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 2.4e-134 483.0 453 56.3
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.9e-132 475.7 453 55.2
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.9e-131 473.4 365 64.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 3.3e-131 472.6 449 55.0
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.0e-124 451.1 448 50.4
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 8.3e-119 431.4 420 54.8
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 4.3e-115 419.1 318 67.3
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.4e-111 405.2 447 47.9
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 7.3e-107 391.7 446 45.5
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.6e-104 383.3 288 67.4
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.2e-101 374.4 457 46.6
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.0e-101 372.1 274 68.6
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 8.7e-100 368.2 566 41.5
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.6e-96 355.1 291 63.6
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.9e-84 316.2 307 56.4
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-82 310.5 257 61.5
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.2e-78 296.6 171 84.2
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.2e-77 294.7 262 56.1
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 1.1e-75 288.1 187 75.4
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.3e-74 284.6 190 75.8
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.5e-72 277.7 337 47.5
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 2.8e-66 256.9 199 63.3
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.8e-65 254.2 182 70.3
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.2e-61 241.5 200 59.5
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 6.7e-60 235.7 200 59.0
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.5e-56 224.6 333 41.1
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 5.5e-54 216.1 116 85.3
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.7e-53 213.0 143 68.5
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.7e-50 203.4 130 76.9
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 3.1e-49 200.3 120 75.0
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 5.3e-49 199.5 120 75.8
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.9e-46 191.0 120 73.3
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 4.2e-46 189.9 120 72.5
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.4e-46 188.7 105 83.8
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-43 181.8 120 70.0
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-36 158.7 184 49.5
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.2e-35 155.2 179 52.0
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 7.0e-33 146.0 145 53.1
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.7e-31 141.4 420 29.5
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 1.1e-30 138.7 85 75.3
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.1e-30 138.7 106 69.8
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.4e-25 120.9 75 73.3
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 5.9e-24 116.3 91 64.8
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 1.7e-23 114.8 142 47.9
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.3e-23 114.4 66 75.8
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 6.8e-20 102.8 119 46.2
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 1.7e-18 98.2 60 75.0
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 3.7e-18 97.1 66 71.2
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.5e-14 85.1 104 45.2
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.9e-14 84.7 60 66.7
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.5e-11 75.1 39 84.6
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.4e-11 73.9 39 79.5
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.5e-06 58.5 32 71.9
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 3.3e-06 57.4 34 79.4
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.3e-06 57.0 25 96.0


User provided reference genes

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