Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01377 Erythranthe guttata HOM05D002840 ORTHO05D003088 6.4e-46 187.2 104 100.0
Migut.E00893 Erythranthe guttata HOM05D002840 ORTHO05D003088 1.2e-23 113.2 75 88.0
Migut.E01635 Erythranthe guttata HOM05D002840 ORTHO05D003088 1.2e-23 113.2 75 88.0
Oeu017207.1 Olea europaea HOM05D002840 ORTHO05D003088 3.0e-11 72.0 37 81.1
COL.COLO4_07199 Corchorus olitorius HOM05D002840 ORTHO05D003088 2.0e-10 69.3 37 73.0
Sopen08g026390 Solanum pennellii HOM05D002840 ORTHO05D003088 2.5e-10 68.9 38 73.7
CDE02G1116 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 4.3e-10 68.2 37 75.7
CDE11G0044 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 4.3e-10 68.2 37 78.4
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 4.3e-10 68.2 33 81.8
PGSC0003DMG400026245 Solanum tuberosum HOM05D002840 ORTHO05D003088 5.7e-10 67.8 71 49.3
Actinidia10865 Actinidia chinensis HOM05D002840 ORTHO05D003088 7.4e-10 67.4 38 73.7
Duzib068G0843 Durio zibethinus HOM05D002840 ORTHO05D003088 7.4e-10 67.4 40 67.5
SGA_v2.0_scaffold6G03162 Striga asiatica HOM05D002840 ORTHO05D003088 7.4e-10 67.4 42 69.0
Atru.chr9.1211 Acer truncatum HOM05D002840 ORTHO05D003088 9.7e-10 67.0 37 73.0
Nn1g00765 Nelumbo nucifera HOM05D002840 ORTHO05D003088 1.3e-09 66.6 38 71.1
Nn6g33763 Nelumbo nucifera HOM05D002840 ORTHO05D003088 1.3e-09 66.6 40 70.0
PGR042G0534 Punica granatum HOM05D002840 ORTHO05D003088 1.3e-09 66.6 34 79.4
SalBow8G2480 Salvia bowleyana HOM05D002840 ORTHO05D003088 1.3e-09 66.6 34 79.4
TAR375G0892 Trochodendron aralioides HOM05D002840 ORTHO05D003088 1.3e-09 66.6 38 71.1
unitig_52.g17215 Utricularia gibba HOM05D002840 ORTHO05D003088 1.3e-09 66.6 33 84.8
CDE11G0936 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 1.7e-09 66.2 36 77.8
Gohir.A08G163300 Gossypium hirsutum HOM05D002840 ORTHO05D003088 2.2e-09 65.9 37 67.6
Gohir.D08G183100 Gossypium hirsutum HOM05D002840 ORTHO05D003088 2.2e-09 65.9 37 67.6
Gorai.004G192200 Gossypium raimondii HOM05D002840 ORTHO05D003088 2.2e-09 65.9 37 67.6
MBI04_g13853_MAGBIO Magnolia biondii HOM05D002840 ORTHO05D003088 2.2e-09 65.9 32 81.2
Ciclev10021868m.g Citrus clementina HOM05D002840 ORTHO05D003088 2.8e-09 65.5 37 70.3
Duzib205G0050 Durio zibethinus HOM05D002840 ORTHO05D003088 2.8e-09 65.5 37 70.3
Solyc08g077880.3 Solanum lycopersicum HOM05D002840 ORTHO05D003088 2.8e-09 65.5 71 47.9
MSTRG.1952 Avicennia marina HOM05D002840 ORTHO05D003088 3.7e-09 65.1 37 78.4
CiPaw.11G072900 Carya illinoinensis HOM05D002840 ORTHO05D003088 3.7e-09 65.1 37 67.6
CSS0038832 Camellia sinensis var. sinensis HOM05D002840 ORTHO05D003088 4.8e-09 64.7 40 62.5
FvH4_5g20330 Fragaria vesca HOM05D002840 ORTHO05D003088 4.8e-09 64.7 37 70.3
FAN08G3190 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.8e-09 64.7 37 70.3
FAN13G2006 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.8e-09 64.7 37 70.3
FAN18G0247 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.8e-09 64.7 37 70.3
Gohir.A12G213000 Gossypium hirsutum HOM05D002840 ORTHO05D003088 4.8e-09 64.7 36 69.4
Lalb_Chr05g0220921 Lupinus albus HOM05D002840 ORTHO05D003088 4.8e-09 64.7 37 73.0
Cfa012324 Carpinus fangiana HOM05D002840 ORTHO05D003088 6.3e-09 64.3 42 61.9
CiPaw.12G055800 Carya illinoinensis HOM05D002840 ORTHO05D003088 6.3e-09 64.3 37 67.6
FAN04G2804 Fragaria x ananassa HOM05D002840 ORTHO05D003088 6.3e-09 64.3 37 70.3
Manes.02G045000 Manihot esculenta HOM05D002840 ORTHO05D003088 6.3e-09 64.3 37 70.3
Sopen08g003130 Solanum pennellii HOM05D002840 ORTHO05D003088 6.3e-09 64.3 50 58.0
PGSC0003DMG400020492 Solanum tuberosum HOM05D002840 ORTHO05D003088 6.3e-09 64.3 50 58.0
RcHm_v2.0_Chr7g0205511 Rosa chinensis HOM05D002840 ORTHO05D003088 8.2e-09 63.9 37 70.3
Sp7g16560 Schrenkiella parvula HOM05D002840 ORTHO05D003088 8.2e-09 63.9 74 48.6
Actinidia31493 Actinidia chinensis HOM05D002840 ORTHO05D003088 1.1e-08 63.5 31 83.9
Cpa.g.sc98.27 Carica papaya HOM05D002840 ORTHO05D003088 1.1e-08 63.5 31 77.4
Hma1.2p1_0840F.1_g226610 Hydrangea macrophylla HOM05D002840 ORTHO05D003088 1.1e-08 63.5 38 65.8
Nitab4.5_0000185g0170 Nicotiana tabacum HOM05D002840 ORTHO05D003088 1.1e-08 63.5 39 64.1
Nitab4.5_0009451g0010 Nicotiana tabacum HOM05D002840 ORTHO05D003088 1.1e-08 63.5 36 69.4
Solyc08g007180.3 Solanum lycopersicum HOM05D002840 ORTHO05D003088 1.1e-08 63.5 36 69.4
Aqoxy3G02656 Aquilegia oxysepala HOM05D002840 ORTHO05D003088 1.4e-08 63.2 36 69.4
Gohir.D12G215500 Gossypium hirsutum HOM05D002840 ORTHO05D003088 1.4e-08 63.2 36 66.7
Gorai.008G231100 Gossypium raimondii HOM05D002840 ORTHO05D003088 1.4e-08 63.2 36 66.7
Nitab4.5_0000500g0220 Nicotiana tabacum HOM05D002840 ORTHO05D003088 1.4e-08 63.2 36 69.4
AT4G17600 Arabidopsis thaliana HOM05D002840 ORTHO05D003088 1.8e-08 62.8 84 41.7
arahy.Tifrunner.gnm1.ann1.YIXS33 Arachis hypogaea HOM05D002840 ORTHO05D003088 1.8e-08 62.8 38 68.4
arahy.Tifrunner.gnm1.ann1.Z0I5FU Arachis hypogaea HOM05D002840 ORTHO05D003088 1.8e-08 62.8 38 68.4
CDE04G2971 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 1.8e-08 62.8 32 81.2
Haze_08372 Corylus avellana HOM05D002840 ORTHO05D003088 1.8e-08 62.8 41 63.4
MELO3C013899.2 Cucumis melo HOM05D002840 ORTHO05D003088 1.8e-08 62.8 38 65.8
CsaV3_3G002290 Cucumis sativus L. HOM05D002840 ORTHO05D003088 1.8e-08 62.8 38 65.8
Dinv28875 Davidia involucrata HOM05D002840 ORTHO05D003088 1.8e-08 62.8 37 67.6
Peaxi162Scf00102g00088 Petunia axillaris HOM05D002840 ORTHO05D003088 1.8e-08 62.8 36 66.7
TWI15G0197 Tripterygium wilfordii HOM05D002840 ORTHO05D003088 1.8e-08 62.8 34 70.6
TAR636G1068 Trochodendron aralioides HOM05D002840 ORTHO05D003088 1.8e-08 62.8 37 67.6
CAN.G572.7 Capsicum annuum HOM05D002840 ORTHO05D003088 2.4e-08 62.4 31 80.6
Cc08_g11360 Coffea canephora HOM05D002840 ORTHO05D003088 2.4e-08 62.4 34 70.6
HanXRQChr13g0418271 Helianthus annuus HOM05D002840 ORTHO05D003088 2.4e-08 62.4 38 68.4
Manes.01G088500 Manihot esculenta HOM05D002840 ORTHO05D003088 2.4e-08 62.4 37 67.6
Potri.001G151300 Populus trichocarpa HOM05D002840 ORTHO05D003088 2.4e-08 62.4 34 70.6
Prupe.5G057100 Prunus persica HOM05D002840 ORTHO05D003088 2.4e-08 62.4 37 67.6
AL7G37000 Arabidopsis lyrata HOM05D002840 ORTHO05D003088 3.1e-08 62.0 36 69.4
BcaC06g33557 Brassica carinata HOM05D002840 ORTHO05D003088 3.1e-08 62.0 36 69.4
BcaNung06052 Brassica carinata HOM05D002840 ORTHO05D003088 3.1e-08 62.0 36 69.4
Eucgr.E00355 Eucalyptus grandis HOM05D002840 ORTHO05D003088 3.1e-08 62.0 31 80.6
vmacro14123 Vaccinium macrocarpon HOM05D002840 ORTHO05D003088 3.1e-08 62.0 42 66.7
Dinv25133 Davidia involucrata HOM05D002840 ORTHO05D003088 4.1e-08 61.6 37 67.6
Glyma.01G204700 Glycine max HOM05D002840 ORTHO05D003088 4.1e-08 61.6 42 59.5
MD04G1055800 Malus domestica HOM05D002840 ORTHO05D003088 4.1e-08 61.6 33 75.8
Nitab4.5_0006594g0060 Nicotiana tabacum HOM05D002840 ORTHO05D003088 4.1e-08 61.6 40 60.0
Sed0026673 Sechium edule HOM05D002840 ORTHO05D003088 4.1e-08 61.6 37 67.6
ClCG10G002240 Citrullus lanatus HOM05D002840 ORTHO05D003088 5.3e-08 61.2 37 64.9
Potri.003G083500 Populus trichocarpa HOM05D002840 ORTHO05D003088 5.3e-08 61.2 34 70.6
QL12p008813 Quercus lobata HOM05D002840 ORTHO05D003088 5.3e-08 61.2 36 66.7
arahy.Tifrunner.gnm1.ann1.ALKQ9T Arachis hypogaea HOM05D002840 ORTHO05D003088 6.9e-08 60.8 37 67.6
arahy.Tifrunner.gnm1.ann1.BV80JU Arachis hypogaea HOM05D002840 ORTHO05D003088 6.9e-08 60.8 37 67.6
Ca_22013_v3 Cicer arietinum L. HOM05D002840 ORTHO05D003088 6.9e-08 60.8 76 44.7
HanXRQChr03g0089741 Helianthus annuus HOM05D002840 ORTHO05D003088 6.9e-08 60.8 38 68.4
Lj8A276T43 Lonicera japonica HOM05D002840 ORTHO05D003088 6.9e-08 60.8 38 68.4
MD06G1047300 Malus domestica HOM05D002840 ORTHO05D003088 6.9e-08 60.8 37 67.6
Rhsim07G0119300 Rhododendron simsii HOM05D002840 ORTHO05D003088 6.9e-08 60.8 31 80.6
VMungo0251G3117 Vigna mungo HOM05D002840 ORTHO05D003088 6.9e-08 60.8 37 67.6
ECA240G0003 Erigeron canadensis HOM05D002840 ORTHO05D003088 9.1e-08 60.5 38 65.8
PRCOL_00003530 Prasinoderma coloniale HOM05D002840 ORTHO05D003088 9.1e-08 60.5 39 64.1
Ah.12g054000 Amaranthus hybridus HOM05D002840 ORTHO05D003088 1.2e-07 60.1 36 66.7
BcaC04g21645 Brassica carinata HOM05D002840 ORTHO05D003088 1.2e-07 60.1 41 61.0
A03p50540 Brassica napus HOM05D002840 ORTHO05D003088 1.2e-07 60.1 41 61.0
BolC9t55808H Brassica oleracea HOM05D002840 ORTHO05D003088 1.2e-07 60.1 41 61.0
BraA03t14143Z Brassica rapa HOM05D002840 ORTHO05D003088 1.2e-07 60.1 41 61.0
Glyma.05G066100 Glycine max HOM05D002840 ORTHO05D003088 1.2e-07 60.1 33 75.8
Glyma.17G147900 Glycine max HOM05D002840 ORTHO05D003088 1.2e-07 60.1 37 67.6
Psat4g075640 Pisum sativum HOM05D002840 ORTHO05D003088 1.2e-07 60.1 37 67.6
Thecc.03G240800 Theobroma cacao HOM05D002840 ORTHO05D003088 1.2e-07 60.1 37 59.5
HPP92_014883 Vanilla planifolia HOM05D002840 ORTHO05D003088 1.2e-07 60.1 31 80.6
Carub.0007s2379 Capsella rubella HOM05D002840 ORTHO05D003088 1.5e-07 59.7 36 66.7
ECA233G4390 Erigeron canadensis HOM05D002840 ORTHO05D003088 1.5e-07 59.7 42 59.5
Oeu040673.1 Olea europaea HOM05D002840 ORTHO05D003088 1.5e-07 59.7 38 65.8
THA.LOC104812817 Tarenaya hassleriana HOM05D002840 ORTHO05D003088 1.5e-07 59.7 41 61.0
GSVIVG01003693001 Vitis vinifera HOM05D002840 ORTHO05D003088 1.5e-07 59.7 29 82.8
CANSAT21G1182 Cannabis sativa HOM05D002840 ORTHO05D003088 2.0e-07 59.3 37 64.9
Phvul.003G225000 Phaseolus vulgaris HOM05D002840 ORTHO05D003088 2.0e-07 59.3 37 64.9
TWI60G0531 Tripterygium wilfordii HOM05D002840 ORTHO05D003088 2.0e-07 59.3 37 64.9
CARHR174280 Cardamine hirsuta HOM05D002840 ORTHO05D003088 2.6e-07 58.9 41 56.1
Lsat_1_v5_gn_6_95120 Lactuca sativa HOM05D002840 ORTHO05D003088 2.6e-07 58.9 36 66.7
Lalb_Chr16g0386441 Lupinus albus HOM05D002840 ORTHO05D003088 3.4e-07 58.5 36 66.7
Medtr4g099340 Medicago truncatula HOM05D002840 ORTHO05D003088 3.4e-07 58.5 37 64.9
Oeu040672.1 Olea europaea HOM05D002840 ORTHO05D003088 3.4e-07 58.5 29 79.3
Ah.07g199180 Amaranthus hybridus HOM05D002840 ORTHO05D003088 4.5e-07 58.2 36 63.9
AL8G10970 Arabidopsis lyrata HOM05D002840 ORTHO05D003088 4.5e-07 58.2 35 65.7
PSO063G1214 Papaver somniferum HOM05D002840 ORTHO05D003088 4.5e-07 58.2 41 61.0
PSO782G0833 Papaver somniferum HOM05D002840 ORTHO05D003088 4.5e-07 58.2 41 61.0
Sp2g11920 Schrenkiella parvula HOM05D002840 ORTHO05D003088 4.5e-07 58.2 41 58.5
Aa31sc58G50 Aethionema arabicum HOM05D002840 ORTHO05D003088 5.9e-07 57.8 82 36.6
BcaB07g30792 Brassica carinata HOM05D002840 ORTHO05D003088 5.9e-07 57.8 31 74.2
BcaC06g34285 Brassica carinata HOM05D002840 ORTHO05D003088 5.9e-07 57.8 41 58.5
BcaNung03455 Brassica carinata HOM05D002840 ORTHO05D003088 5.9e-07 57.8 36 66.7
A06p45280 Brassica napus HOM05D001479 ORTHO05D003088 5.9e-07 57.8 43 58.1
C07p30810 Brassica napus HOM05D002840 ORTHO05D003088 5.9e-07 57.8 79 40.5
C07p48870 Brassica napus HOM05D002840 ORTHO05D003088 5.9e-07 57.8 35 68.6
BolC7t43622H Brassica oleracea HOM05D002840 ORTHO05D003088 5.9e-07 57.8 79 40.5
BolC7t45395H Brassica oleracea HOM05D002840 ORTHO05D003088 5.9e-07 57.8 35 68.6
BraA06t27400Z Brassica rapa HOM05D002840 ORTHO05D003088 5.9e-07 57.8 43 58.1
Hund11318 Selenicereus undatus HOM05D002840 ORTHO05D003088 5.9e-07 57.8 34 64.7
TPR.G17131 Trifolium pratense HOM05D002840 ORTHO05D003088 5.9e-07 57.8 37 64.9
C09p29440 Brassica napus HOM05D002840 ORTHO05D003088 7.7e-07 57.4 31 71.0
CARHR224320 Cardamine hirsuta HOM05D002840 ORTHO05D003088 7.7e-07 57.4 31 71.0
Mapoly0001s0043 Marchantia polymorpha HOM05D002840 ORTHO05D003088 7.7e-07 57.4 31 71.0
Sabra03G0054100 Salix brachista HOM05D002840 ORTHO05D003088 7.7e-07 57.4 33 66.7
AT5G47110 Arabidopsis thaliana HOM05D002840 ORTHO05D003088 1.0e-06 57.0 36 61.1
A09p22860 Brassica napus HOM05D002840 ORTHO05D003088 1.0e-06 57.0 31 74.2
BraA09t37888Z Brassica rapa HOM05D002840 ORTHO05D003088 1.0e-06 57.0 31 74.2
Lj4g0023884 Lotus japonicus HOM05D002840 ORTHO05D003088 1.0e-06 57.0 31 74.2
Aa31LG6G340 Aethionema arabicum HOM05D002840 ORTHO05D003088 1.3e-06 56.6 31 71.0
BcaC03g16940 Brassica carinata HOM05D002840 ORTHO05D003088 1.3e-06 56.6 41 56.1
C02p48420 Brassica napus HOM05D002840 ORTHO05D003088 1.3e-06 56.6 41 56.1
BolC2t10872H Brassica oleracea HOM05D002840 ORTHO05D003088 1.3e-06 56.6 41 56.1
Sc01g0008000 Simmondsia chinensis HOM05D002840 ORTHO05D003088 1.3e-06 56.6 35 62.9
Thhalv10000997m.g Eutrema salsugineum HOM05D002840 ORTHO05D003088 1.7e-06 56.2 31 71.0
Os02g0125700 Oryza sativa ssp. japonica HOM05D002840 ORTHO05D003088 1.7e-06 56.2 31 71.0
Pp3c2_19700 Physcomitrium patens HOM05D002840 ORTHO05D003088 1.7e-06 56.2 35 62.9
AUR62007164 Chenopodium quinoa HOM05D002840 ORTHO05D003088 2.2e-06 55.8 37 67.6
AUR62018842 Chenopodium quinoa HOM05D002840 ORTHO05D003088 2.2e-06 55.8 37 64.9
DCAR_005585 Daucus carota HOM05D002840 ORTHO05D003088 2.2e-06 55.8 67 43.3
EL10Ac5g12275 Beta vulgaris HOM05D002840 ORTHO05D003088 3.8e-06 55.1 36 58.3
BcaC06g31415 Brassica carinata HOM05D002840 ORTHO05D003088 3.8e-06 55.1 31 67.7
A02p30860 Brassica napus HOM05D002840 ORTHO05D003088 3.8e-06 55.1 31 67.7
Zm00001eb230870 Zea mays HOM05D002840 ORTHO05D003088 3.8e-06 55.1 32 68.8
Carub.0008s0064 Capsella rubella HOM05D002840 ORTHO05D003088 5.0e-06 54.7 35 60.0
Pp3c1_26740 Physcomitrium patens HOM05D002840 ORTHO05D003088 5.0e-06 54.7 31 67.7
BraA02t08099Z Brassica rapa HOM05D002840 ORTHO05D003088 8.5e-06 53.9 31 64.5


User provided reference genes

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