Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 4.5e-153 544.7 293 100.0
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.4e-98 363.6 338 65.1
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 3.0e-93 345.9 337 63.2
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.3e-83 313.9 351 56.1
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.4e-82 310.5 319 60.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.1e-77 294.3 310 58.7
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.2e-76 290.8 339 53.4
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.3e-75 287.3 318 57.9
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 2.9e-75 286.2 333 54.7
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 4.9e-75 285.4 304 56.6
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.1e-73 280.0 333 54.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 2.7e-73 279.6 333 53.5
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 7.8e-73 278.1 313 57.5
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.7e-72 276.9 322 53.7
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.3e-72 276.6 337 53.1
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 3.0e-72 276.2 333 54.7
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.9e-72 275.8 311 55.3
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.1e-72 275.4 329 55.0
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 6.6e-72 275.0 333 52.9
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 8.6e-72 274.6 333 55.0
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.9e-71 273.5 309 56.0
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 7.3e-71 271.6 308 55.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.2e-70 270.8 335 54.6
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.6e-70 270.4 333 52.3
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 1.6e-70 270.4 328 54.3
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.6e-70 269.2 407 46.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 6.2e-70 268.5 320 55.6
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.4e-69 267.3 328 55.8
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.8e-69 266.9 328 53.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 4.0e-69 265.8 314 53.8
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.5e-68 263.8 308 54.5
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.0e-68 263.5 312 54.5
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 3.4e-68 262.7 335 51.9
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 4.4e-68 262.3 330 53.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 5.8e-68 261.9 309 56.0
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 9.9e-68 261.2 375 49.9
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.9e-67 258.8 279 56.3
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 4.9e-67 258.8 294 53.4
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 8.3e-67 258.1 319 53.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.3e-67 258.1 316 51.6
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.4e-66 257.3 321 53.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.9e-66 256.9 316 51.3
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.9e-66 256.9 317 52.4
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.4e-66 256.5 327 52.9
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 4.1e-66 255.8 320 49.7
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 4.6e-65 252.3 319 51.7
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.3e-64 250.8 324 52.5
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.7e-64 250.4 391 46.0
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 6.6e-64 248.4 337 49.0
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.5e-63 247.3 363 44.4
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 4.3e-63 245.7 300 52.3
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.2e-62 244.2 311 50.2
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-62 243.4 340 47.6
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 2.8e-62 243.0 347 47.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.4e-61 240.0 307 51.8
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.4e-61 240.0 356 47.5
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 8.9e-61 238.0 300 51.3
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.5e-60 237.3 311 52.1
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 1.5e-60 237.3 309 50.5
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.5e-60 237.3 346 46.5
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 1.5e-60 237.3 280 53.9
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.9e-59 232.3 270 55.2
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.4e-58 229.9 346 45.7
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.3e-56 223.4 331 48.6
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 3.9e-56 222.6 356 45.2
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 8.7e-56 221.5 330 48.5
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.5e-55 220.7 281 50.9
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.5e-55 220.7 333 45.0
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 3.3e-55 219.5 307 50.5
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 4.3e-55 219.2 324 47.5
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-54 216.9 336 46.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.9e-53 211.8 287 50.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.6e-52 209.9 368 42.4
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 7.6e-52 208.4 292 50.7
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.7e-51 207.2 366 40.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 5.4e-50 202.2 343 43.4
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.9e-48 196.1 293 44.4
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 8.1e-46 188.3 371 40.7
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.1e-45 186.4 230 53.0
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.5e-44 184.1 263 47.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.6e-44 183.3 283 48.1
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 2.6e-44 183.3 375 37.3
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.3e-43 181.0 298 42.6
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.7e-43 180.6 353 41.9
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.7e-43 180.6 257 46.3
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 4.9e-43 179.1 380 37.6
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.9e-42 177.2 268 43.3
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 3.2e-42 176.4 366 37.2
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 7.1e-42 175.3 248 47.2
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 7.1e-42 175.3 260 47.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 7.1e-42 175.3 260 47.7
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.0e-40 169.9 251 46.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.0e-40 169.9 251 46.2
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 8.7e-40 168.3 258 43.8
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.3e-39 166.0 252 46.8
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.7e-38 162.9 267 42.7
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.2e-38 162.2 386 35.8
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 6.9e-37 158.7 388 35.3
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.2e-36 157.9 301 37.5
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.5e-36 156.0 390 35.1
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.5e-35 152.1 139 65.5
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.2e-33 147.9 257 43.2
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.3e-32 143.7 137 61.3
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 3.0e-32 143.3 260 43.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.9e-32 142.9 199 44.7
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 1.5e-31 141.0 322 35.1
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 5.7e-31 139.0 258 40.3
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.4e-31 138.7 172 52.9
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 4.5e-28 129.4 256 38.7
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.1e-26 124.8 151 49.7
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.4e-26 124.4 132 56.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 5.5e-26 122.5 234 37.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.6e-25 120.9 104 66.3
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-25 120.6 159 48.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 3.5e-25 119.8 133 58.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 6.3e-22 109.0 126 54.8
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.3e-21 105.9 108 59.3
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.3e-21 105.9 108 59.3
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.5e-20 104.4 66 74.2
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 1.5e-20 104.4 69 72.5
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.9e-19 100.1 67 71.6
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.9e-18 97.4 136 45.6
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.6e-17 93.2 146 40.4
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 2.0e-15 87.4 118 44.9
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 2.9e-11 73.6 160 39.4
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.0e-08 65.1 142 33.8
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.4e-08 64.7 158 35.4
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 2.3e-08 63.9 166 36.7
SEGI_38635 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 6.3e-06 55.8 79 46.8


User provided reference genes

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