Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 4.8e-55 217.6 113 100.0
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 2.3e-33 145.6 112 64.3
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 1.3e-31 139.8 112 64.3
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 8.3e-31 137.1 113 58.4
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 1.4e-30 136.3 112 60.7
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 3.1e-30 135.2 111 60.4
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 7.0e-30 134.0 113 58.4
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 7.0e-30 134.0 112 58.9
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 1.2e-29 133.3 114 57.9
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.6e-29 132.9 110 60.0
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 2.0e-29 132.5 112 60.7
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 2.7e-29 132.1 113 57.5
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.9e-28 128.6 111 56.8
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 6.6e-28 127.5 113 56.6
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 5.6e-27 124.4 113 57.5
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 1.6e-26 122.9 113 59.3
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 8.0e-26 120.6 96 61.5
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 1.8e-25 119.4 113 59.3
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 4.0e-25 118.2 84 66.7
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 6.8e-25 117.5 111 52.3
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 1.2e-24 116.7 110 56.4
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 5.7e-24 114.4 100 58.0
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 1.3e-23 113.2 77 71.4
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.3e-23 113.2 86 66.3
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.7e-23 111.7 107 53.3
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.8e-22 109.4 113 54.9
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 2.4e-22 109.0 113 50.4
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 3.2e-22 108.6 113 51.3
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 5.4e-22 107.8 107 53.3
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 7.0e-22 107.5 115 49.6
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 9.2e-22 107.1 112 51.8
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.2e-21 106.7 113 49.6
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 1.2e-21 106.7 109 53.2
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.2e-21 106.7 113 54.0
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.6e-21 106.3 113 53.1
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 2.0e-21 105.9 113 54.0
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 2.0e-21 105.9 113 54.0
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.0e-21 105.9 111 54.1
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 2.7e-21 105.5 112 53.6
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 2.7e-21 105.5 111 52.3
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 3.5e-21 105.1 111 51.4
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 3.5e-21 105.1 113 51.3
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.6e-21 104.8 113 52.2
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 4.6e-21 104.8 113 48.7
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.9e-21 104.4 112 52.7
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 5.9e-21 104.4 113 50.4
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 5.9e-21 104.4 113 53.1
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 5.9e-21 104.4 112 50.0
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 7.8e-21 104.0 110 50.9
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.3e-20 103.2 113 52.2
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 1.3e-20 103.2 113 48.7
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 1.3e-20 103.2 70 67.1
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.3e-20 103.2 71 66.2
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 1.7e-20 102.8 111 54.1
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 3.0e-20 102.1 113 49.6
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 3.9e-20 101.7 113 51.3
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 6.6e-20 100.9 114 49.1
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 6.6e-20 100.9 114 49.1
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 8.6e-20 100.5 113 48.7
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.5e-19 99.8 111 50.5
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.3e-19 98.6 112 47.3
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.6e-19 97.8 113 49.6
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 5.6e-19 97.8 113 46.9
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 5.6e-19 97.8 113 46.0
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 5.6e-19 97.8 71 62.0
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 7.3e-19 97.4 112 46.4
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 9.5e-19 97.1 113 46.9
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 9.5e-19 97.1 69 62.3
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.6e-18 96.3 113 46.0
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.6e-18 96.3 109 49.5
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.6e-18 96.3 113 49.6
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 2.8e-18 95.5 83 61.4
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.8e-18 95.5 113 48.7
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 3.6e-18 95.1 113 47.8
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.6e-18 95.1 113 48.7
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 3.6e-18 95.1 108 47.2
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.7e-18 94.7 69 60.9
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 4.7e-18 94.7 132 42.4
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 6.2e-18 94.4 71 62.0
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 8.0e-18 94.0 72 56.9
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 8.0e-18 94.0 113 47.8
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 1.4e-17 93.2 113 46.0
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 1.4e-17 93.2 112 50.0
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.8e-17 92.8 112 48.2
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 1.8e-17 92.8 113 46.0
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 1.8e-17 92.8 113 46.0
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 1.8e-17 92.8 61 73.8
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 2.3e-17 92.4 107 46.7
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 4.0e-17 91.7 57 75.4
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.2e-17 91.3 61 70.5
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 5.2e-17 91.3 113 47.8
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.2e-16 90.1 111 44.1
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 1.5e-16 89.7 110 44.5
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 1.5e-16 89.7 110 46.4
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 2.0e-16 89.4 110 47.3
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 2.6e-16 89.0 115 47.0
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.4e-16 88.6 60 70.0
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 3.4e-16 88.6 123 42.3
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 3.4e-16 88.6 113 44.2
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 4.4e-16 88.2 113 42.5
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 5.8e-16 87.8 115 43.5
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 9.8e-16 87.0 112 47.3
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 9.8e-16 87.0 111 47.7
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 3.7e-15 85.1 108 45.4
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.1e-14 83.6 88 50.0
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.4e-14 83.2 110 42.7
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.2e-14 82.0 113 41.6
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 7.0e-14 80.9 78 48.7
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 1.6e-13 79.7 56 69.6
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 2.7e-13 79.0 107 42.1
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 2.7e-13 79.0 72 45.8
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 3.5e-13 78.6 111 43.2
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 4.6e-13 78.2 84 48.8
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 3.9e-12 75.1 108 43.5
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 5.0e-12 74.7 50 68.0
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 5.0e-12 74.7 50 68.0
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 6.6e-12 74.3 88 47.7
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 8.6e-12 73.9 116 39.7
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 1.1e-11 73.6 105 43.8
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.5e-11 73.2 113 40.7
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 4.3e-11 71.6 89 47.2
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 5.6e-11 71.2 114 38.6
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 5.6e-11 71.2 114 38.6
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 1.2e-10 70.1 116 37.9
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.2e-10 70.1 93 40.9
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 1.6e-10 69.7 112 37.5
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 2.1e-10 69.3 113 36.3
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 2.8e-10 68.9 115 37.4
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 4.7e-10 68.2 87 42.5
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 4.0e-09 65.1 198 27.3
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 4.0e-09 65.1 90 45.6
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 6.8e-09 64.3 84 44.0
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 3.4e-08 62.0 115 34.8
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 1.3e-07 60.1 113 32.7
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 2.2e-07 59.3 47 61.7
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 2.2e-07 59.3 85 40.0
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 8.3e-07 57.4 84 42.9
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 1.1e-06 57.0 111 31.5
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 4.1e-06 55.1 95 32.6
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 5.4e-06 54.7 116 33.6


User provided reference genes

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