Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 3.8e-148 528.1 259 100.0
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 4.9e-111 404.8 216 91.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.9e-103 379.0 204 90.7
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.9e-103 379.0 204 90.7
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.9e-103 379.0 204 90.7
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.9e-103 379.0 204 90.7
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-103 379.0 204 90.7
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-103 378.6 226 84.5
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 3.7e-103 378.6 214 89.3
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.1e-102 377.1 203 92.1
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.9e-102 376.3 205 90.7
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.2e-98 363.6 275 72.0
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.2e-98 363.6 275 72.0
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 7.8e-93 344.4 181 95.0
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 1.0e-92 344.0 181 95.0
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.0e-92 344.0 181 95.0
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-92 343.6 180 93.9
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.3e-92 342.8 181 93.4
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 5.1e-92 341.7 181 93.9
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 5.1e-92 341.7 181 93.9
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 8.7e-92 340.9 181 93.9
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 1.1e-91 340.5 181 93.9
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-91 340.1 181 94.5
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.5e-91 340.1 268 69.0
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.5e-91 339.3 181 92.8
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.5e-91 339.3 181 92.8
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 2.5e-91 339.3 181 93.4
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.1e-90 336.3 181 92.8
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 6.2e-90 334.7 181 90.6
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 6.2e-90 334.7 183 90.7
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 8.1e-90 334.3 182 87.9
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 2.4e-89 332.8 180 92.2
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 4.0e-89 332.0 184 89.1
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.3e-89 331.6 181 91.2
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 6.9e-89 331.3 182 86.3
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.5e-88 330.1 181 90.6
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 1.7e-87 326.6 174 94.8
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 1.6e-85 320.1 183 89.1
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 4.6e-85 318.5 182 83.0
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.7e-84 316.6 170 93.5
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 2.3e-84 316.2 182 83.0
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 5.1e-84 315.1 205 82.4
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.5e-83 313.5 172 92.4
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 2.1e-82 309.7 171 87.1
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 2.6e-80 302.8 181 87.3
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 2.2e-79 299.7 160 90.6
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.6e-77 293.5 233 70.0
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 5.6e-75 285.0 149 95.3
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 1.6e-74 283.5 146 93.8
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 3.1e-73 279.3 153 90.2
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.5e-72 276.9 150 92.0
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 7.1e-70 268.1 210 70.0
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.2e-63 246.5 142 90.8
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 1.8e-60 236.9 149 81.9
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 3.9e-60 235.7 131 88.5
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.3e-59 232.6 145 83.4
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.3e-59 232.6 145 83.4
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.8e-58 229.6 141 83.7
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-54 217.2 133 84.2
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.1e-49 199.5 105 90.5
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.3e-49 198.7 105 90.5
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 6.9e-49 198.4 131 78.6
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 3.4e-48 196.1 118 84.7
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 6.1e-45 185.3 127 67.7
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.5e-43 180.6 105 84.8
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 4.4e-43 179.1 108 84.3
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.9e-39 166.4 88 87.5
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 2.9e-39 166.4 87 90.8
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.4e-38 164.1 106 83.0
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 2.1e-37 160.2 84 91.7
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 8.0e-37 158.3 92 82.6
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.0e-36 157.9 81 91.4
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 3.9e-36 156.0 105 70.5
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.0e-35 153.7 84 89.3
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.8e-34 149.8 155 54.2
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 7.0e-33 145.2 75 94.7
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 7.0e-33 145.2 103 69.9
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.6e-32 143.3 105 74.3
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.0e-31 141.4 75 92.0
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-31 140.2 75 92.0
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-31 140.2 75 92.0
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-31 140.2 75 92.0
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-31 140.2 75 92.0
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.2e-31 140.2 75 92.0
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-30 137.9 72 90.3
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 9.4e-30 134.8 75 90.7
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.7e-29 133.3 72 95.8
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 3.6e-29 132.9 84 83.3
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 4.7e-29 132.5 83 78.3
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 4.0e-28 129.4 105 66.7
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.8e-28 128.6 69 85.5
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 8.8e-28 128.3 75 86.7
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 1.2e-27 127.9 75 86.7
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.6e-27 126.7 61 98.4
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 4.4e-27 125.9 93 63.4
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 4.4e-27 125.9 78 76.9
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 6.3e-26 122.1 113 55.8
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 1.1e-25 121.3 120 60.0
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 3.1e-25 119.8 58 93.1
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.2e-24 117.9 75 80.0
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 6.5e-23 112.1 167 40.1
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 6.5e-23 112.1 73 76.7
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 1.1e-22 111.3 72 79.2
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-22 110.5 121 52.1
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 5.5e-22 109.0 60 80.0
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.2e-21 107.8 56 83.9
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.6e-21 107.5 73 64.4
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 1.6e-21 107.5 59 91.5
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 6.1e-21 105.5 92 64.1
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.5e-19 100.9 109 55.0
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.3e-18 97.8 57 80.7
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 4.8e-18 95.9 44 95.5
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.4e-17 94.4 59 81.4
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 5.9e-16 89.0 56 83.9
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 5.9e-16 89.0 56 83.9
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 2.3e-15 87.0 45 84.4
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.3e-15 87.0 52 84.6
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.1e-14 84.7 99 41.4
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.9e-14 84.0 41 90.2
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 7.2e-14 82.0 86 57.0
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 7.2e-14 82.0 55 70.9
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.2e-13 81.3 52 76.9
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.2e-13 81.3 52 76.9
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.2e-13 81.3 52 76.9
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.1e-13 79.0 52 82.7
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 1.8e-12 77.4 41 85.4
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.0e-12 76.6 47 74.5
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-11 74.7 48 81.2
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 2.8e-10 70.1 106 47.2
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 3.7e-10 69.7 36 97.2
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-10 69.7 40 82.5
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-10 69.7 40 82.5
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.6e-08 64.3 52 69.2
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-08 63.9 49 61.2
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 7.8e-08 62.0 49 61.2
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.3e-07 61.2 49 63.3
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.3e-07 61.2 67 50.7
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 1.7e-07 60.8 187 30.5
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 5.0e-07 59.3 47 61.7


User provided reference genes

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