Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I01216 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.7e-76 289.3 148 100.0
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 3.4e-48 195.3 114 89.5
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 1.3e-47 193.4 114 87.7
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 1.3e-47 193.4 114 87.7
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 1.3e-47 193.4 114 87.7
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 2.2e-47 192.6 114 88.6
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 2.2e-47 192.6 114 88.6
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.2e-47 192.6 114 88.6
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 6.3e-47 191.0 114 87.7
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 6.3e-47 191.0 114 87.7
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 6.3e-47 191.0 114 86.8
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 6.3e-47 191.0 114 86.8
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 1.8e-46 189.5 114 86.8
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 1.8e-46 189.5 114 86.8
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 3.1e-46 188.7 136 76.5
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 4.1e-46 188.3 121 84.3
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 5.4e-46 188.0 114 84.2
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 5.4e-46 188.0 114 84.2
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 7.0e-46 187.6 114 86.8
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 9.1e-46 187.2 121 83.5
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 9.1e-46 187.2 114 85.1
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
CDE04G1193 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 114 85.1
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 114 85.1
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 82.6
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 1.2e-45 186.8 121 83.5
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 2.0e-45 186.0 121 83.5
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 2.0e-45 186.0 121 82.6
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 2.7e-45 185.7 121 83.5
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 3.5e-45 185.3 121 82.6
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 4.5e-45 184.9 121 82.6
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 4.5e-45 184.9 121 82.6
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 5.9e-45 184.5 121 82.6
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 81.8
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 7.7e-45 184.1 114 83.3
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 7.7e-45 184.1 121 82.6
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 1.0e-44 183.7 121 81.8
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 1.0e-44 183.7 121 81.8
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 1.0e-44 183.7 128 78.1
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 1.3e-44 183.3 121 81.8
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 1.3e-44 183.3 121 81.8
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 1.3e-44 183.3 121 81.8
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 1.3e-44 183.3 121 82.6
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.0
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.0
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 2.3e-44 182.6 121 81.8
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 2.9e-44 182.2 121 81.8
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 2.9e-44 182.2 121 81.8
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 3.8e-44 181.8 121 81.0
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 3.8e-44 181.8 121 81.8
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 3.8e-44 181.8 120 82.5
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
BcaNung04945 Brassica carinata HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
BcaNung07324 Brassica carinata HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 80.2
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
THA.LOC104801500 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 5.0e-44 181.4 121 81.0
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 6.5e-44 181.0 121 81.0
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 6.5e-44 181.0 121 81.0
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 8.6e-44 180.6 123 82.1
AL6G29450 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 1.1e-43 180.3 121 80.2
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 1.1e-43 180.3 121 80.2
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 1.1e-43 180.3 121 80.2
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-43 179.9 121 80.2
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-43 179.9 121 80.2
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-43 179.9 121 80.2
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-43 179.9 121 80.2
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.5e-43 179.9 121 80.2
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 1.9e-43 179.5 121 79.3
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 2.5e-43 179.1 121 79.3
HPP92_012145 Vanilla planifolia HOM05D003172 ORTHO05D003708 4.2e-43 178.3 114 80.7
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 5.5e-43 177.9 121 79.3
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 5.5e-43 177.9 121 78.5
CBR_g17178 Chara braunii HOM05D003172 ORTHO05D003708 7.2e-43 177.6 114 78.9
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 9.5e-43 177.2 118 81.4
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 9.5e-43 177.2 121 78.5
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 1.6e-42 176.4 123 79.7
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 3.6e-42 175.3 123 78.9
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 3.6e-42 175.3 123 78.9
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 3.6e-42 175.3 121 78.5
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 4.7e-42 174.9 123 78.9
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 4.7e-42 174.9 123 78.9
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 6.1e-42 174.5 133 74.4
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 2.3e-41 172.6 151 66.2
CARHR217100 Cardamine hirsuta HOM05D003172 ORTHO05D003708 5.2e-41 171.4 121 76.0
Lsat_1_v5_gn_8_47041 Lactuca sativa HOM05D003172 ORTHO05D003708 1.3e-39 166.8 120 75.8
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.4e-38 163.3 120 73.3
Lsat_1_v5_gn_8_48920 Lactuca sativa HOM05D003172 ORTHO05D003708 5.9e-37 157.9 123 69.9
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 1.0e-36 157.1 114 77.2
Aa31LG11G11350 Aethionema arabicum HOM05D003172 ORTHO05D003708 7.0e-30 134.4 150 55.3
Cpa.g.sc785.1 Carica papaya HOM05D003172 ORTHO05D003708 2.7e-29 132.5 77 89.6
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 6.0e-29 131.3 75 90.7
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 7.8e-29 131.0 75 89.3
SEGI_27722 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 5.0e-28 128.3 75 88.0
MCO08G071 Micromonas commoda HOM05D003172 ORTHO05D003708 4.0e-25 118.6 108 56.5
Lsat_1_v5_gn_8_47061 Lactuca sativa HOM05D000041 ORTHO05D000452 4.9e-23 111.7 75 76.0
SHI23374 Sapria himalayana HOM05D003172 ORTHO05D003708 6.4e-23 111.3 83 77.1
CBR_g48494 Chara braunii HOM05D003172 ORTHO05D003708 2.7e-21 105.9 114 50.9
Nitab4.5_0000001g0360 Nicotiana tabacum HOM05D003172 ORTHO05D003708 1.3e-15 87.0 97 56.7
C02p09770 Brassica napus HOM05D003172 ORTHO05D003708 5.4e-14 81.6 73 65.8
Lsat_1_v5_gn_2_56961 Lactuca sativa HOM05D003172 ORTHO05D003708 2.1e-13 79.7 64 65.6
PRCOL_00002674 Prasinoderma coloniale HOM05D003172 ORTHO05D003708 6.0e-13 78.2 110 40.0
Cre04.g227350 Chlamydomonas reinhardtii HOM05D003172 ORTHO05D003708 5.1e-12 75.1 119 41.2
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 2.4e-09 66.2 50 72.0
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 3.1e-09 65.9 37 86.5
HanXRQChr09g0245801 Helianthus annuus HOM05D003172 ORTHO05D003708 3.1e-09 65.9 40 82.5
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 8.9e-09 64.3 42 76.2
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.2e-08 63.9 67 53.7
SHI23373 Sapria himalayana HOM05D003172 ORTHO05D003708 1.2e-08 63.9 32 93.8
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 2.0e-08 63.2 85 49.4
SEGI_39352 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 1.3e-07 60.5 41 73.2
Lsat_1_v5_gn_8_137421 Lactuca sativa HOM05D000658 ORTHO05D000826 1.7e-07 60.1 37 78.4


User provided reference genes

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