Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 4.5e-24 113.6 52 100.0
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.7e-23 111.7 52 98.1
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.7e-23 111.7 52 98.1
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.7e-23 111.7 52 98.1
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.2e-23 111.3 52 98.1
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 96.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.0e-23 110.2 52 96.2
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 6.5e-23 109.8 52 92.3
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 8.5e-23 109.4 52 96.2
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 1.1e-22 109.0 52 94.2
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.1e-22 109.0 52 96.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.5e-22 108.6 52 94.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.9e-22 108.2 52 92.3
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.9e-22 108.2 52 94.2
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.9e-22 108.2 52 94.2
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 90.4
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 94.2
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 94.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 4.2e-22 107.1 52 90.4
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 94.2
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 2.1e-21 104.8 51 92.2
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 94.2
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 90.4
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 90.4
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 4.7e-21 103.6 53 94.3
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 4.7e-21 103.6 53 92.5
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 4.7e-21 103.6 53 94.3
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 6.1e-21 103.2 53 88.7
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 8.0e-21 102.8 50 94.0
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 8.0e-21 102.8 47 97.9
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.0e-20 102.4 50 90.0
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 92.3
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-20 101.7 52 88.5
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.8e-20 101.7 52 90.4
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 4.0e-20 100.5 53 90.6
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 4.0e-20 100.5 53 90.6
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 5.2e-20 100.1 44 100.0
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 88.5
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 88.5
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.5e-19 98.6 46 95.7
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 2.0e-19 98.2 44 97.7
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 2.0e-19 98.2 46 93.5
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.6e-19 97.8 44 97.7
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 2.6e-19 97.8 45 95.6
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 2.6e-19 97.8 46 93.5
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 2.6e-19 97.8 44 97.7
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 2.6e-19 97.8 44 97.7
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 2.6e-19 97.8 50 86.0
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.6e-19 97.8 44 97.7
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.6e-19 97.8 44 97.7
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 3.3e-19 97.4 50 82.0
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 4.4e-19 97.1 47 93.6
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 4.4e-19 97.1 46 91.3
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 4.4e-19 97.1 46 91.3
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 4.4e-19 97.1 46 91.3
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 7.5e-19 96.3 46 91.3
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.7e-19 95.9 51 84.3
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 9.7e-19 95.9 44 95.5
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.7e-19 95.9 48 87.5
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 9.7e-19 95.9 44 95.5
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 2.2e-18 94.7 44 90.9
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 3.7e-18 94.0 54 85.2
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 90.9
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 90.9
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 90.9
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 90.9
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 93.2
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 4.8e-18 93.6 50 84.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.3e-18 93.2 53 81.1
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.3e-18 93.2 53 81.1
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 8.2e-18 92.8 45 88.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.1e-17 92.4 44 88.6
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.8e-17 91.7 46 93.5
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.8e-17 91.7 48 89.6
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.8e-17 91.7 49 85.7
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.4e-17 91.3 45 91.1
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 3.1e-17 90.9 54 83.3
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 4.1e-17 90.5 48 83.3
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.1e-17 90.5 40 97.5
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 5.3e-17 90.1 44 90.9
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 5.3e-17 90.1 45 93.3
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 7.0e-17 89.7 50 84.0
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 7.0e-17 89.7 50 84.0
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.1e-17 89.4 44 88.6
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 9.1e-17 89.4 44 88.6
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-16 88.6 53 77.4
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.0e-16 88.2 52 69.2
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.0e-16 88.2 52 69.2
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.0e-16 88.2 42 88.1
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 3.5e-16 87.4 67 65.7
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 1.0e-15 85.9 43 88.4
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.0e-15 85.9 44 86.4
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.9e-15 84.3 44 84.1
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 3.8e-15 84.0 43 86.0
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.5e-14 82.0 47 83.0
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.5e-14 82.0 47 83.0
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 1.5e-14 82.0 52 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.9e-14 81.6 43 81.4
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 4.2e-14 80.5 42 83.3
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 5.5e-14 80.1 53 71.7
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 5.5e-14 80.1 66 62.1
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-13 79.0 84 51.2
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.2e-13 79.0 45 75.6
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.6e-13 78.6 50 74.0
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.6e-13 77.4 48 64.6
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.4e-12 75.5 54 64.8
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.0e-11 71.6 39 76.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 3.4e-11 70.9 41 75.6
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 4.4e-11 70.5 83 50.6
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 9.8e-11 69.3 35 85.7
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 2.8e-10 67.8 32 84.4
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.7e-10 67.4 34 85.3
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 3.7e-10 67.4 42 66.7
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-09 64.3 31 90.3
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 3.1e-09 64.3 31 90.3
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 7.0e-09 63.2 58 50.0
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 7.0e-09 63.2 57 49.1
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.0e-09 63.2 57 49.1
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.2e-08 62.4 57 49.1
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.7e-08 61.2 49 53.1
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-07 58.2 37 64.9
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.5e-06 53.5 49 46.9


User provided reference genes

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