Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.2e-97 359.0 189 100.0
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.1e-83 312.0 189 86.2
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 7.0e-83 310.8 189 85.7
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.0e-77 292.7 190 84.2
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.6e-77 292.4 191 81.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.4e-77 291.6 190 81.6
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.3e-76 290.0 189 82.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-75 286.2 193 80.3
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-75 286.2 193 80.3
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.4e-75 285.8 186 82.8
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 7.0e-75 284.3 190 80.5
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 7.0e-75 284.3 189 80.4
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.0e-74 282.7 190 80.0
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.7e-74 282.3 190 79.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 7.8e-74 280.8 189 79.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.3e-73 280.0 193 77.2
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.8e-73 278.5 189 79.4
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.8e-73 278.5 191 78.0
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.6e-73 277.3 191 78.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.1e-72 276.9 188 77.1
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 79.5
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.5e-72 276.6 189 79.9
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 3.3e-72 275.4 186 78.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.3e-72 275.4 189 79.4
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 5.6e-72 274.6 194 77.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.3e-72 274.2 190 80.0
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 9.5e-72 273.9 190 78.9
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 9.5e-72 273.9 189 78.8
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.2e-71 273.5 186 77.4
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.6e-71 273.1 195 76.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.1e-71 272.7 188 79.3
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.8e-71 272.3 194 75.3
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.8e-71 272.3 205 73.7
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 4.7e-71 271.6 190 77.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 6.1e-71 271.2 174 81.0
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.8e-70 269.6 190 78.9
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.3e-70 269.2 194 77.3
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 5.2e-70 268.1 189 75.1
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.9e-70 267.3 190 74.2
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 8.9e-70 267.3 187 77.0
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-69 266.9 190 75.8
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-69 266.9 190 75.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.5e-69 266.5 190 75.8
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.0e-69 266.2 192 76.0
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.4e-69 265.4 190 75.8
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.4e-69 265.4 186 75.8
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.4e-69 265.4 192 76.0
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.4e-69 265.4 178 79.2
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.8e-69 264.6 187 77.0
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 9.8e-69 263.8 191 76.4
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 9.8e-69 263.8 192 75.5
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.3e-68 263.5 192 74.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.7e-68 263.1 190 75.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.2e-68 262.7 187 76.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 3.7e-68 261.9 186 74.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 8.3e-68 260.8 190 75.8
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 8.3e-68 260.8 188 76.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.9e-67 259.6 188 75.0
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 3.2e-67 258.8 189 74.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 4.1e-67 258.5 189 74.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.4e-67 258.1 188 75.0
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 7.0e-67 257.7 171 78.9
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.0e-67 257.7 189 74.1
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 7.0e-67 257.7 189 73.5
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 9.2e-67 257.3 189 74.6
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.6e-66 256.5 190 76.3
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.6e-66 256.5 192 72.4
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 72.9
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 4.6e-66 255.0 188 72.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 6.0e-66 254.6 186 73.7
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-65 253.8 190 74.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.3e-65 253.4 185 74.6
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.3e-65 253.4 189 75.1
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.3e-65 253.4 189 72.5
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 189 73.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.3e-65 252.7 219 64.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-65 252.3 191 74.9
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-65 252.3 191 74.9
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-65 252.3 190 74.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.0e-65 252.3 190 74.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.0e-65 252.3 190 74.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.0e-65 252.3 189 71.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 8.6e-65 250.8 190 74.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 8.6e-65 250.8 189 71.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 5.6e-64 248.1 228 63.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 73.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 7.3e-64 247.7 190 73.7
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-63 246.5 190 72.6
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.6e-63 246.5 194 68.6
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.1e-63 246.1 190 73.2
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.1e-63 246.1 190 73.2
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.8e-63 245.7 192 72.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.6e-63 245.4 194 68.6
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.7e-63 245.0 162 81.5
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 71.4
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.0e-63 244.2 186 72.0
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.4e-62 243.4 190 70.5
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 3.1e-62 242.3 220 61.8
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.0e-62 241.9 190 70.5
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.8e-62 241.1 191 70.2
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.5e-61 240.0 189 68.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.4e-61 238.4 186 73.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.5e-61 237.7 184 74.5
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 7.5e-61 237.7 191 73.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 9.8e-61 237.3 184 70.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.4e-60 234.6 189 70.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.9e-59 233.0 180 70.6
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.2e-59 232.3 139 85.6
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.2e-58 230.3 196 66.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-58 230.3 165 76.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.3e-57 226.1 186 67.7
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-57 225.3 166 75.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-57 225.3 155 79.4
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-56 223.4 155 78.1
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.5e-56 223.4 155 78.1
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 7.3e-56 221.1 186 68.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.6e-55 219.9 188 66.5
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.7e-55 218.4 125 87.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 4.7e-55 218.4 203 63.5
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.2e-55 218.0 126 88.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-54 216.9 124 89.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.3e-54 216.1 125 86.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 8.9e-54 214.2 124 87.9
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-53 213.0 160 72.5
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.6e-53 212.6 191 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 7.5e-53 211.1 182 65.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.5e-53 211.1 157 72.6
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 9.9e-53 210.7 195 62.6
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 2.2e-52 209.5 188 63.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.7e-52 208.8 184 60.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.4e-51 206.8 184 60.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-50 203.0 197 63.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 6.0e-50 201.4 151 72.8
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.3e-49 200.3 146 76.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-49 199.9 151 71.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.7e-49 199.9 128 78.9
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.7e-49 199.9 164 67.7
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.7e-49 199.9 173 61.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-49 199.5 151 71.5
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.8e-46 189.9 157 66.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 2.4e-46 189.5 157 66.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.1e-43 180.6 142 69.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 5.4e-43 178.3 197 56.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-42 177.2 123 74.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.0e-41 172.6 193 55.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 2.1e-39 166.4 129 65.9
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.8e-37 158.3 191 51.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.7e-36 156.8 124 62.9
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.9e-36 155.2 145 58.6
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.4e-35 153.7 160 55.0
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.4e-35 153.7 141 61.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.9e-35 153.3 145 57.2
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.2e-35 152.5 191 51.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 4.2e-35 152.1 163 55.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 7.1e-35 151.4 97 80.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 7.1e-35 151.4 130 59.2
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.0e-34 148.3 191 46.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 4.8e-31 138.7 77 89.6
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 6.2e-31 138.3 151 57.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-30 137.5 113 65.5
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.1e-30 136.0 178 46.6
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-25 119.8 68 88.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.8e-23 112.8 68 85.3
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.1e-22 110.9 68 83.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.1e-19 98.2 77 64.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 9.3e-19 97.8 65 76.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-18 97.4 126 54.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.6e-18 97.1 62 79.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.1e-18 96.7 126 54.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.3e-17 93.2 59 76.3
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 5.1e-17 92.0 59 74.6
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.5e-16 90.5 124 41.9
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 4.8e-15 85.5 47 87.2
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.6e-13 79.7 97 54.6
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 7.1e-11 71.6 82 51.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.5e-08 63.2 37 83.8
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.7e-08 62.0 53 64.2
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 9.7e-08 61.2 53 64.2
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.4e-06 57.4 53 60.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 6.9e-06 55.1 30 86.7


User provided reference genes

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