Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.1e-214 749.2 518 100.0
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.0e-156 556.6 519 75.1
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.3e-141 505.4 545 66.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 9.1e-141 504.6 497 72.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 4.5e-140 502.3 457 67.6
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 4.5e-140 502.3 458 67.0
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.3e-139 500.7 530 61.3
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 8.5e-139 498.0 458 67.0
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 9.4e-138 494.6 542 66.1
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.0e-136 489.6 468 65.0
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 7.4e-135 485.0 448 64.3
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.3e-134 484.2 457 65.9
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.7e-134 482.6 452 64.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 6.3e-134 481.9 466 60.7
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.2e-132 477.6 467 62.7
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.6e-132 476.5 529 67.1
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.6e-132 476.5 534 62.9
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 4.5e-132 475.7 400 76.0
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 2.9e-131 473.0 456 62.5
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 5.0e-131 472.2 461 58.4
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.9e-130 470.3 457 63.9
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 5.5e-130 468.8 536 61.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 7.2e-130 468.4 462 58.2
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 3.6e-129 466.1 457 60.4
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.3e-128 463.4 521 67.9
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 8.8e-128 461.5 463 60.7
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.1e-127 461.1 464 61.4
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 2.6e-127 459.9 536 62.3
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.6e-127 459.9 538 59.9
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 3.7e-126 456.1 331 72.5
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.4e-125 453.4 466 59.2
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 7.0e-125 451.8 330 70.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.6e-124 450.7 476 61.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.6e-124 450.7 532 62.0
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 7.7e-124 448.4 466 60.9
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.3e-123 447.6 471 59.2
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.2e-123 446.8 463 57.5
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.8e-123 446.0 461 63.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.2e-121 441.0 457 59.5
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.2e-121 441.0 425 67.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.7e-121 439.9 334 69.5
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.7e-121 439.9 312 73.4
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 8.0e-121 438.3 511 54.2
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.3e-120 436.8 482 55.4
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 3.0e-120 436.4 445 62.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 4.0e-120 436.0 464 56.2
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 5.2e-120 435.6 448 63.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 8.8e-120 434.9 455 64.8
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.5e-119 434.1 683 46.9
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 2.6e-119 433.3 313 73.2
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.7e-119 432.2 515 55.9
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 4.8e-118 429.1 279 81.4
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 4.1e-117 426.0 466 55.8
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 9.1e-117 424.9 395 69.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.7e-116 423.3 464 61.9
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.3e-115 421.0 536 58.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.3e-115 421.0 454 65.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.3e-115 421.0 459 59.0
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 2.9e-115 419.9 472 58.1
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.1e-114 417.9 412 68.9
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.5e-114 417.5 318 70.4
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.5e-114 417.5 423 61.0
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 4.2e-114 416.0 391 68.0
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 7.2e-114 415.2 457 60.4
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.6e-113 414.1 461 62.9
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 2.1e-113 413.7 413 67.1
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.0e-112 411.4 310 69.7
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.4e-112 411.0 460 62.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 5.2e-112 409.1 550 55.1
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 6.8e-112 408.7 377 69.2
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.0e-111 407.1 463 58.5
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.6e-111 406.8 403 64.5
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 3.4e-111 406.4 403 66.3
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 4.4e-111 406.0 445 58.2
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.7e-110 404.1 403 64.0
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 6.3e-110 402.1 424 57.8
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.1e-109 399.8 520 59.4
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 5.4e-109 399.1 318 68.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.0e-108 397.1 298 72.8
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 5.9e-108 395.6 530 54.2
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 5.9e-108 395.6 435 56.1
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.0e-107 394.8 317 67.8
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.9e-107 393.3 315 67.9
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 2.9e-107 393.3 392 64.5
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.1e-106 391.3 336 62.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-106 391.3 324 67.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.1e-106 391.3 324 67.0
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 2.1e-105 387.1 313 64.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 9.8e-103 378.3 325 65.5
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 9.8e-103 378.3 317 64.7
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 4.9e-102 375.9 293 70.3
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.1e-101 374.8 528 53.4
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.4e-101 373.6 384 66.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 4.1e-101 372.9 384 66.4
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.3e-98 363.2 290 66.2
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.3e-98 362.8 323 61.9
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.3e-98 362.8 323 61.9
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 7.3e-98 362.1 312 63.1
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.6e-97 360.9 416 60.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.6e-95 353.6 328 61.0
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 3.5e-92 343.2 471 48.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-91 340.9 473 48.4
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.7e-91 340.9 521 52.4
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.3e-91 340.5 238 73.9
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 5.8e-87 325.9 252 68.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 9.8e-87 325.1 387 58.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.9e-86 322.8 308 56.2
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.2e-84 318.2 378 56.6
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.0e-84 317.4 460 53.0
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.0e-83 315.1 393 55.7
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 2.5e-82 310.5 287 59.9
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.2e-79 301.6 431 50.8
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 5.8e-79 299.3 391 52.2
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 6.4e-78 295.8 344 50.3
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 9.9e-71 271.9 307 49.8
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.4e-64 250.8 333 45.3
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.8e-63 246.1 229 57.2
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 7.6e-63 245.7 206 59.2
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 5.3e-56 223.0 212 56.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 1.9e-53 214.5 350 39.1
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 9.3e-53 212.2 247 49.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 3.3e-42 177.2 304 38.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 3.1e-32 144.1 234 41.5
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.9e-26 124.8 227 44.9
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.1e-24 119.0 71 81.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 5.9e-23 113.2 83 72.3
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-22 112.5 83 72.3
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-22 112.5 83 72.3
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.3e-17 95.5 84 59.5
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 2.5e-13 81.3 299 26.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 4.2e-13 80.5 255 26.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 6.7e-11 73.2 97 49.5
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 6.7e-11 73.2 97 49.5
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.5e-10 72.0 43 72.1
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 2.6e-07 61.2 111 42.3
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.7e-06 58.5 98 45.9
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 1.7e-06 58.5 103 35.9


User provided reference genes

Program Settings