Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 4.6e-127 458.0 245 100.0
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 7.6e-98 360.9 241 79.3
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.6e-95 353.2 204 84.8
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.6e-87 325.5 261 65.1
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 6.1e-87 324.7 247 73.7
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 2.3e-86 322.8 217 73.7
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.5e-85 320.1 253 66.8
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.3e-85 318.9 219 72.6
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 4.4e-85 318.5 257 68.5
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 1.1e-83 313.9 259 66.4
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.4e-83 313.5 255 65.1
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 1.2e-82 310.5 258 65.1
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.5e-82 310.1 218 71.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.5e-82 308.5 224 70.1
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.3e-81 307.0 232 66.8
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.3e-81 307.0 243 68.3
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 2.2e-81 306.2 221 69.2
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 2.2e-81 306.2 216 70.8
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 3.8e-81 305.4 253 63.2
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 6.5e-81 304.7 223 69.5
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.5e-80 302.8 221 69.2
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 4.2e-80 302.0 218 68.3
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 5.5e-80 301.6 215 68.8
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 4.7e-79 298.5 247 62.3
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 4.7e-79 298.5 216 68.5
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 6.1e-79 298.1 243 60.9
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.0e-78 297.4 223 67.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.8e-78 296.6 217 68.7
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 5.2e-78 295.0 217 68.2
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 6.7e-78 294.7 219 66.7
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 6.7e-78 294.7 259 58.3
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.1e-77 293.9 259 58.3
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.1e-77 293.9 259 58.3
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.5e-77 293.5 206 68.4
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.5e-77 293.5 219 67.6
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 2.0e-77 293.1 213 68.1
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.0e-77 293.1 255 59.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 2.6e-77 292.7 223 68.2
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 5.7e-77 291.6 199 74.4
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 7.4e-77 291.2 219 66.2
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 7.4e-77 291.2 245 64.1
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 1.3e-76 290.4 220 65.0
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.7e-76 290.0 256 58.2
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.7e-76 290.0 210 70.5
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-76 289.7 253 59.3
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-76 289.7 258 58.9
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 3.7e-76 288.9 248 62.5
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 4.8e-76 288.5 212 67.0
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 8.2e-76 287.7 213 69.5
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.1e-75 287.3 248 60.1
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.4e-75 287.0 250 60.8
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.4e-75 287.0 221 66.5
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 2.4e-75 286.2 220 64.5
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 7.0e-75 284.6 218 64.7
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.2e-74 283.9 206 69.4
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.2e-74 283.9 263 59.3
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.2e-74 283.9 220 64.1
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 1.2e-74 283.9 223 62.3
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.6e-74 282.7 213 65.3
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 4.5e-74 282.0 205 69.8
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 4.5e-74 282.0 221 66.5
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 4.5e-74 282.0 225 61.8
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.9e-74 281.6 252 58.3
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.9e-74 281.6 252 57.9
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 5.9e-74 281.6 255 58.0
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 7.7e-74 281.2 220 63.6
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 7.7e-74 281.2 210 65.7
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.0e-73 280.8 216 64.4
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.3e-73 280.4 255 57.6
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.7e-73 280.0 201 70.6
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 2.2e-73 279.6 246 61.0
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 8.5e-73 277.7 216 66.2
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.1e-72 277.3 217 65.4
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.9e-72 276.6 201 70.1
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 3.2e-72 275.8 217 65.4
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 3.2e-72 275.8 164 82.3
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 3.2e-72 275.8 212 65.1
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 3.2e-72 275.8 201 66.7
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 4.2e-72 275.4 212 64.2
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 4.2e-72 275.4 212 64.2
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 4.2e-72 275.4 226 63.3
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.2e-71 273.9 202 68.3
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.6e-71 273.5 217 63.1
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.1e-71 273.1 215 64.7
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 3.6e-71 272.3 211 63.5
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 4.7e-71 271.9 253 58.1
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.8e-70 270.0 216 64.4
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 6.7e-70 268.1 183 72.1
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 8.8e-70 267.7 225 56.9
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 8.8e-70 267.7 221 62.9
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 2.0e-69 266.5 223 62.3
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 5.7e-69 265.0 207 65.2
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.7e-69 265.0 199 65.3
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 3.1e-67 259.2 216 59.3
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 4.1e-67 258.8 235 57.0
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 2.9e-65 252.7 216 61.1
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 1.5e-64 250.4 198 63.6
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.2e-64 249.2 214 58.9
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 5.5e-64 248.4 219 58.4
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 5.5e-64 248.4 216 57.9
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.7e-63 246.1 193 64.2
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 8.0e-63 244.6 169 73.4
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 4.0e-62 242.3 158 73.4
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.0e-62 242.3 214 57.9
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.2e-62 241.9 232 55.2
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 6.8e-62 241.5 214 57.9
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.4e-61 238.8 214 57.5
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.4e-59 233.8 212 56.6
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 2.4e-59 233.0 206 58.3
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 5.4e-59 231.9 231 51.5
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 2.7e-58 229.6 205 57.6
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 5.0e-57 225.3 216 52.3
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.0e-57 225.3 173 66.5
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 6.5e-57 224.9 237 53.2
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 2.5e-56 223.0 228 53.1
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.2e-53 214.2 165 65.5
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 8.3e-52 208.0 168 63.7
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.4e-51 206.5 183 62.3
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 5.4e-51 205.3 161 61.5
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 3.6e-47 192.6 163 57.1
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 2.6e-45 186.4 128 71.1
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 7.5e-45 184.9 131 79.4
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 9.2e-43 177.9 164 56.1
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 6.8e-38 161.8 250 40.0
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.4e-35 154.1 89 75.3
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.0e-33 147.9 123 61.8
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 6.6e-33 145.2 140 52.1
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.8e-30 137.1 135 53.3
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 4.0e-30 136.0 159 44.0
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 2.4e-27 126.7 184 43.5
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 5.1e-25 119.0 135 51.1
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 5.8e-21 105.5 147 46.3
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 9.6e-16 88.2 50 78.0
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 2.9e-12 76.6 157 33.8
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 2.9e-12 76.6 157 33.8
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 6.4e-12 75.5 158 32.9
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.3e-09 67.8 83 48.2
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.4e-06 57.8 40 65.0


User provided reference genes

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