Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.1e-90 334.7 170 100.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 5.0e-64 248.1 164 70.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.6e-57 226.5 168 64.9
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.5e-57 224.9 162 66.0
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.2e-49 200.3 140 65.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.0e-48 195.7 167 54.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.3e-47 192.2 170 60.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.8e-45 184.5 171 49.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.0e-44 183.0 168 54.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.0e-44 183.0 168 53.6
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 7.5e-44 181.0 179 55.9
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 7.5e-44 181.0 171 52.6
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.5e-44 181.0 175 51.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 9.8e-44 180.6 176 55.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-43 180.3 179 54.2
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.7e-43 179.9 175 52.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.2e-43 179.5 175 48.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-43 179.5 171 48.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-43 179.5 171 48.5
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.9e-43 179.1 168 53.0
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.9e-43 179.1 168 53.0
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.9e-43 179.1 175 52.6
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.9e-43 179.1 173 49.7
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.7e-43 178.7 167 52.7
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.7e-43 178.7 167 52.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.7e-43 178.7 172 51.7
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.9e-43 178.3 171 51.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.4e-43 177.9 171 50.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.4e-43 177.9 176 50.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.4e-43 177.9 138 57.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.1e-42 177.2 113 63.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 167 50.9
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-42 176.8 175 50.9
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.4e-42 176.8 175 49.7
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.4e-42 176.0 174 49.4
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.2e-42 175.6 179 54.2
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.1e-42 175.3 174 50.0
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.1e-42 175.3 174 50.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 9.2e-42 174.1 127 60.6
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.2e-42 174.1 170 51.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 9.2e-42 174.1 167 50.9
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.2e-42 174.1 127 60.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.2e-41 173.7 179 50.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.6e-41 173.3 117 63.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.0e-41 172.9 132 56.8
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.0e-41 172.9 174 46.6
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.7e-41 172.6 129 58.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.7e-41 172.6 182 48.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.7e-41 172.6 171 49.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.7e-41 172.6 180 47.8
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 4.6e-41 171.8 127 61.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.6e-41 171.8 167 52.1
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.6e-41 171.8 177 50.8
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 4.6e-41 171.8 120 62.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.0e-41 171.4 169 50.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 7.8e-41 171.0 128 58.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.0e-40 170.6 137 57.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.0e-40 170.6 127 60.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.3e-40 170.2 126 58.7
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.7e-40 169.9 135 55.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.3e-40 169.5 173 55.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-40 169.5 174 49.4
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.0e-40 169.1 136 58.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.9e-40 168.7 120 60.8
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 5.0e-40 168.3 173 47.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 6.6e-40 167.9 132 58.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.1e-39 167.2 126 57.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.1e-39 167.2 172 47.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.1e-39 167.2 119 60.5
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-39 167.2 113 59.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.5e-39 166.8 127 56.7
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.3e-39 165.6 165 46.7
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 5.6e-39 164.9 130 55.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.5e-39 164.1 118 61.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 9.5e-39 164.1 169 49.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.2e-38 163.7 113 65.5
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.6e-38 163.3 120 58.3
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.7e-38 161.8 179 47.5
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.2e-38 161.4 113 56.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.1e-38 161.0 128 55.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-37 160.2 125 55.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 3.1e-37 159.1 174 44.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 4.0e-37 158.7 126 55.6
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 4.0e-37 158.7 126 55.6
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 4.0e-37 158.7 126 55.6
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 4.0e-37 158.7 126 55.6
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.2e-37 158.3 134 54.5
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.2e-37 158.3 134 54.5
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 5.2e-37 158.3 114 57.9
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 5.2e-37 158.3 127 54.3
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 5.2e-37 158.3 127 54.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 6.8e-37 157.9 128 53.1
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 6.8e-37 157.9 126 57.1
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.8e-37 157.9 124 53.2
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 8.9e-37 157.5 132 54.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 8.9e-37 157.5 159 45.9
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-36 157.1 128 53.1
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-36 156.8 120 56.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-36 156.8 175 48.0
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.5e-36 156.8 120 57.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.5e-36 156.8 124 56.5
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-36 156.4 128 52.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.0e-36 156.4 128 54.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.0e-36 156.4 128 55.5
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.6e-36 156.0 128 52.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.6e-36 156.0 126 53.2
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.6e-36 156.0 120 55.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.4e-36 155.6 128 52.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.4e-36 155.6 128 52.3
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.4e-36 155.6 113 54.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.8e-36 154.8 131 52.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 7.5e-36 154.5 124 55.6
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 7.5e-36 154.5 124 55.6
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 7.5e-36 154.5 124 55.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 9.8e-36 154.1 142 47.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.7e-35 153.3 116 59.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.2e-35 152.9 131 50.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-35 152.9 124 51.6
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.9e-35 152.5 120 58.3
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.7e-35 152.1 120 57.5
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.7e-35 152.1 118 56.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.7e-35 152.1 131 50.4
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 4.9e-35 151.8 129 55.0
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.4e-34 149.4 165 46.1
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 7.1e-34 147.9 127 52.8
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 7.1e-34 147.9 123 50.4
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 9.2e-34 147.5 120 56.7
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 2.1e-33 146.4 127 52.8
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.7e-33 146.0 128 46.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-32 143.7 113 53.1
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-32 142.5 109 51.4
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.9e-32 142.1 114 56.1
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.9e-32 142.1 118 51.7
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.9e-31 139.8 119 51.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.2e-30 137.1 123 50.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.9e-28 127.5 103 47.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.4e-27 124.4 95 54.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 2.4e-26 122.9 100 53.0
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.4e-26 121.7 134 44.8
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.5e-25 119.0 92 55.4
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.0e-24 117.5 121 43.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.3e-24 117.1 122 45.9
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-24 117.1 92 55.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.0e-24 115.9 118 43.2
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.6e-24 114.8 127 44.1
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 8.6e-24 114.4 112 48.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.1e-23 114.0 123 43.1
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 7.3e-23 111.3 109 49.5
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-22 110.5 111 45.9
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.8e-22 109.4 112 45.5
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 4.7e-22 108.6 107 44.9
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-22 108.2 84 52.4
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 8.1e-22 107.8 118 42.4
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 9.9e-20 100.9 109 45.0
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-19 100.1 74 54.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.1e-17 93.2 118 39.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.1e-17 93.2 120 37.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 7.8e-17 91.3 122 39.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 7.8e-17 91.3 122 39.3
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.3e-16 89.7 121 41.3
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.3e-16 89.7 76 51.3
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.9e-16 89.0 133 39.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.7e-16 87.8 107 40.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 4.3e-15 85.5 122 36.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-15 84.7 68 48.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.2e-12 77.4 47 70.2
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 9.9e-12 74.3 83 42.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 7.1e-10 68.2 64 43.8
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.8e-08 63.5 140 29.3
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.3e-07 59.3 40 60.0


User provided reference genes

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