Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.8e-171 604.7 307 100.0
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.5e-103 380.2 317 63.1
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 3.4e-103 379.0 309 67.3
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.7e-94 350.1 319 62.4
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.7e-92 342.8 261 67.8
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 3.5e-92 342.4 260 66.9
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 4.6e-92 342.0 285 63.9
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.0e-91 340.9 253 68.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.3e-91 340.5 268 66.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 7.4e-90 334.7 295 62.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 4.0e-88 328.9 227 70.9
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.0e-88 327.8 273 63.4
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 9.0e-88 327.8 313 58.5
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 1.2e-87 327.4 224 71.9
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.5e-87 327.0 301 58.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.0e-87 326.6 260 63.5
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 5.8e-87 325.1 308 57.8
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 7.6e-87 324.7 249 66.3
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.6e-87 324.7 296 58.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.3e-86 323.9 293 59.4
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.7e-86 323.6 280 61.8
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 1.7e-86 323.6 222 72.5
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.2e-86 323.2 273 62.6
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.9e-86 322.8 291 58.1
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 3.8e-86 322.4 297 57.9
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.8e-86 322.4 279 61.6
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 4.9e-86 322.0 286 59.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 8.4e-86 321.2 272 60.7
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.4e-85 319.7 279 63.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.4e-85 319.7 297 59.3
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.2e-85 319.3 226 68.6
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.2e-85 318.9 227 69.2
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 7.1e-85 318.2 296 57.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 7.1e-85 318.2 275 62.5
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 7.1e-85 318.2 279 60.6
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 9.3e-85 317.8 284 60.6
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 9.3e-85 317.8 284 60.2
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 9.3e-85 317.8 259 62.5
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.6e-84 317.0 285 59.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 2.7e-84 316.2 272 58.5
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 3.5e-84 315.8 267 61.8
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 6.0e-84 315.1 222 68.9
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 6.0e-84 315.1 239 64.4
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 7.9e-84 314.7 313 56.5
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 7.9e-84 314.7 313 56.5
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.3e-83 313.2 303 56.1
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 3.0e-83 312.8 225 66.2
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.0e-83 312.8 286 57.0
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.0e-83 312.8 275 59.6
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.0e-83 312.8 252 63.1
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 3.9e-83 312.4 228 67.1
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 3.9e-83 312.4 265 60.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 5.1e-83 312.0 223 67.7
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 5.1e-83 312.0 252 62.3
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.1e-83 312.0 265 61.5
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.1e-82 310.8 284 58.8
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-82 310.8 254 61.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.1e-82 310.8 227 66.5
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.1e-82 310.8 299 57.5
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.5e-82 310.5 227 67.8
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.5e-82 310.5 276 60.9
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.9e-82 310.1 227 66.1
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-82 310.1 226 67.3
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.5e-82 309.7 228 68.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.5e-82 309.7 254 61.4
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.3e-82 309.3 229 66.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.3e-82 308.9 263 61.2
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 5.6e-82 308.5 225 66.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 7.4e-82 308.1 225 66.7
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 7.4e-82 308.1 262 61.5
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.1e-81 306.6 291 56.7
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.1e-81 306.6 226 65.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.8e-81 306.2 276 59.1
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.8e-81 306.2 259 60.2
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 3.7e-81 305.8 296 54.4
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 6.2e-81 305.1 227 65.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.4e-80 303.9 269 59.9
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.8e-80 303.5 262 61.5
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.9e-80 301.6 257 61.9
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 6.9e-80 301.6 269 59.9
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.2e-79 300.8 236 62.3
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.0e-79 300.1 231 67.1
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.0e-79 300.1 280 56.1
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.3e-78 297.4 233 64.8
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.3e-78 297.4 226 65.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.4e-77 293.9 245 60.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.4e-77 293.9 308 54.2
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.9e-77 293.5 303 52.5
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 7.1e-77 291.6 228 61.8
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 4.6e-76 288.9 295 52.9
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.0e-75 287.7 279 57.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 2.5e-74 283.1 272 57.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.1e-72 276.2 231 63.6
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 6.9e-72 275.0 204 64.7
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 9.0e-72 274.6 231 62.3
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 9.0e-72 274.6 279 53.0
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.6e-71 273.1 285 53.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.9e-69 266.9 220 61.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 4.6e-68 262.3 203 63.5
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.5e-66 257.3 284 51.4
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 3.4e-63 246.1 244 52.9
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-62 243.4 193 63.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 2.2e-62 243.4 243 52.7
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.2e-61 239.6 220 56.8
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.6e-60 237.3 220 55.5
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.1e-60 236.9 222 55.4
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-60 236.9 193 61.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.1e-60 236.9 193 61.1
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 6.7e-59 231.9 220 55.0
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.6e-58 229.9 225 51.1
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 6.3e-57 225.3 178 64.0
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 6.3e-57 225.3 220 53.2
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 8.2e-57 224.9 223 52.9
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.9e-55 218.8 297 43.8
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 8.5e-54 214.9 188 61.7
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.1e-53 214.5 227 53.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.7e-52 209.9 181 60.2
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 3.9e-51 206.1 196 54.1
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.7e-49 200.7 157 63.7
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 4.8e-49 199.1 208 53.4
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.5e-46 188.3 171 57.9
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 9.1e-32 141.7 215 39.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.0e-30 138.3 133 57.1
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.9e-29 134.0 210 39.5
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.5e-29 132.5 190 43.2
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 2.2e-25 120.6 101 59.4
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.3e-22 111.3 65 80.0
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.3e-22 110.5 209 31.1
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 9.8e-18 95.1 57 75.4
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.8e-18 95.1 86 54.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 8.0e-12 75.5 45 75.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.0e-11 75.1 52 65.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 3.4e-10 70.1 79 50.6
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.7e-09 67.8 78 50.0
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 2.9e-09 67.0 75 49.3
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 8.3e-09 65.5 38 78.9
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 6.0e-07 59.3 73 47.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.0e-06 58.5 60 50.0
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.0e-06 57.0 70 48.6


User provided reference genes

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