Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 0.0e+00 1333.9 650 100.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 0.0e+00 1174.5 651 86.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 0.0e+00 1143.6 663 83.9
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 0.0e+00 1114.8 677 80.8
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 0.0e+00 1090.5 656 79.9
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1088.6 654 80.7
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 0.0e+00 1085.1 709 75.7
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 0.0e+00 1082.4 658 79.5
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 0.0e+00 1082.4 657 79.6
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1082.0 651 80.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 0.0e+00 1080.1 657 79.6
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1077.4 654 79.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.4e-312 1074.3 650 80.3
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.4e-312 1074.3 654 79.1
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 4.4e-312 1073.5 656 79.0
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 8.9e-312 1073.2 657 78.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 653 77.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 653 78.4
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 3.1e-308 1061.2 654 77.8
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 5.4e-308 1060.4 652 78.8
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 7.8e-307 1056.6 653 78.6
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 655 77.4
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 8.6e-306 1053.1 655 77.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.1e-305 1052.7 653 78.4
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.5e-305 1051.6 655 78.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 7.3e-305 1050.0 655 76.8
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.1e-304 1048.5 655 77.3
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.1e-304 1048.5 655 76.9
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.1e-304 1048.5 655 76.9
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 5.2e-303 1043.9 657 76.9
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.5e-302 1042.3 658 76.9
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 652 77.9
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.6e-302 1041.6 655 78.3
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.6e-302 1041.6 655 76.9
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 9.8e-302 1039.6 652 76.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.2e-301 1038.5 655 76.0
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.9e-301 1038.1 655 77.4
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 3.7e-301 1037.7 659 77.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 4.9e-301 1037.3 655 75.6
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 6.4e-301 1036.9 708 73.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 3.2e-300 1034.6 652 77.9
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 4.1e-300 1034.2 652 77.5
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 7.0e-300 1033.5 655 76.6
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.2e-299 1032.7 655 75.4
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.2e-299 1032.7 654 77.8
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 3.5e-299 1031.2 655 75.1
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 4.6e-299 1030.8 651 76.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 6.0e-299 1030.4 657 76.0
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 7.8e-299 1030.0 654 75.5
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.3e-298 1028.5 647 76.2
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 3.0e-298 1028.1 652 75.9
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.9e-298 1027.7 656 75.8
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-297 1025.8 651 75.7
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.5e-297 1025.8 673 74.1
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.9e-297 1025.4 652 76.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 651 75.6
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 651 75.6
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 4.3e-297 1024.2 651 75.6
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.3e-297 1024.2 651 75.7
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 9.5e-297 1023.1 650 75.4
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 4.7e-296 1020.8 651 75.3
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-296 1020.8 651 75.3
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 3.1e-295 1018.1 655 75.6
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.0e-295 1017.7 651 75.3
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 5.2e-295 1017.3 652 75.0
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 3.7e-293 1011.1 678 73.2
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.4e-292 1008.4 653 75.2
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 5.4e-292 1007.3 654 75.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.0e-292 1006.9 684 72.4
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 9.2e-292 1006.5 651 74.3
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.2e-291 1006.1 651 74.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.2e-291 1006.1 651 74.5
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.0e-291 1003.8 703 70.6
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-290 1003.0 652 74.7
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 3.9e-290 1001.1 653 74.3
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 5.0e-290 1000.7 651 73.7
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.3e-289 997.7 681 72.7
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 8.1e-288 993.4 651 73.4
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.4e-287 992.6 660 73.3
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.2e-286 989.6 631 75.9
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.2e-285 985.3 654 73.1
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.9e-285 984.9 666 73.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.1e-284 983.0 651 73.4
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.9e-282 974.5 608 77.6
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 3.9e-282 974.5 658 71.7
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 2.0e-278 962.2 655 72.7
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.7e-277 959.1 666 69.7
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 3.8e-277 958.0 659 70.3
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.1e-276 954.5 685 68.9
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 7.1e-276 953.7 660 70.3
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.3e-274 948.7 660 69.4
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 6.6e-274 947.2 683 68.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 8.7e-274 946.8 674 70.0
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 7.3e-273 943.7 600 77.2
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 5.8e-270 934.1 656 70.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.7e-269 932.6 633 73.8
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.2e-268 928.3 668 67.4
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.2e-267 926.4 698 66.2
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 3.9e-266 921.4 666 66.7
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.4e-263 912.9 668 66.9
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-262 909.8 566 76.9
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.6e-262 908.7 595 75.3
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.2e-261 905.6 662 68.4
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.9e-260 902.5 666 65.5
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 4.2e-260 901.4 566 76.1
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 5.4e-260 901.0 660 66.1
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.7e-259 898.7 670 67.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.5e-259 898.3 801 59.7
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.3e-255 884.4 551 77.7
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.0e-254 882.5 668 64.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.9e-250 868.2 665 64.7
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.8e-247 859.4 614 71.5
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.5e-243 845.1 867 54.3
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.4e-239 832.4 534 73.6
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.4e-238 828.6 655 62.1
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.3e-232 810.1 504 76.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.6e-230 802.4 484 79.8
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 2.1e-227 792.7 638 61.1
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-220 769.2 668 58.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.5e-217 760.0 497 75.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 4.1e-191 672.2 667 53.7
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.6e-182 643.7 664 51.7
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.7e-181 640.2 651 53.1
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.5e-180 637.1 708 48.2
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.9e-176 622.1 501 64.7
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.5e-174 615.9 635 50.9
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.3e-173 613.2 659 50.4
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.3e-172 608.2 513 59.8
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 5.2e-170 602.1 389 75.8
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 3.2e-167 592.8 337 83.7
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.1e-155 553.5 337 79.5
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.8e-155 553.1 676 46.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.9e-152 543.1 365 73.2
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.6e-148 528.9 320 78.4
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.9e-140 503.8 657 46.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.4e-138 496.9 276 85.1
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.8e-129 465.7 342 68.7
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.4e-122 443.7 648 41.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.4e-113 413.3 651 39.3
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-109 401.7 309 68.3
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 2.8e-107 393.7 381 57.7
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.4e-106 390.6 270 72.2
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 5.9e-89 332.8 237 69.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 7.0e-82 309.3 576 35.6
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.5e-79 300.8 504 38.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 2.2e-75 287.7 439 40.3
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.2e-73 282.0 651 30.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.0e-73 281.2 231 58.9
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 5.4e-66 256.5 307 49.2
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.7e-65 254.2 201 61.2
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 3.9e-64 250.4 231 57.1
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 8.1e-62 242.7 562 35.1
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-56 225.3 277 45.5
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 8.9e-45 186.0 139 74.1
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.1e-40 170.2 145 65.5
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.2e-33 149.1 228 42.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.7e-32 145.2 112 65.2
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.5e-31 142.1 108 64.8
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 3.1e-29 134.4 126 56.3
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 3.0e-24 117.9 61 77.0
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 8.7e-24 116.3 66 80.3
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 1.3e-22 112.5 80 67.5
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 2.8e-22 111.3 59 74.6
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 2.9e-19 101.3 114 47.4
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 1.9e-18 98.6 146 39.7
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.5e-18 98.2 92 57.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 9.3e-18 96.3 69 60.9
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 3.5e-17 94.4 65 70.8
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-16 92.0 50 88.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 7.4e-15 86.7 79 57.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 7.6e-12 76.6 50 74.0
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.0e-11 76.3 41 82.9
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 6.5e-11 73.6 45 84.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 7.2e-10 70.1 49 65.3
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 9.3e-10 69.7 74 52.7
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.2e-09 69.3 51 68.6
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.8e-08 65.5 48 56.2
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.9e-08 64.3 42 69.0
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 8.7e-08 63.2 48 72.9
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.1e-07 62.8 52 57.7
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.5e-07 61.6 37 73.0
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 1.3e-06 59.3 274 23.7
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 4.8e-06 57.4 266 24.8


User provided reference genes

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