Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.5e-225 785.0 380 100.0
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.4e-194 682.9 379 85.0
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 2.6e-185 652.1 382 82.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 3.7e-184 648.3 380 81.3
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 7.0e-183 644.0 381 80.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 5.9e-182 641.0 381 79.8
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 6.6e-181 637.5 383 80.2
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 8.6e-181 637.1 383 80.2
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 3.6e-179 631.7 382 79.6
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.4e-178 629.8 383 77.5
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 7.5e-177 624.0 382 79.6
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 9.8e-177 623.6 383 78.9
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.3e-176 623.2 383 78.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.7e-176 622.9 383 78.9
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 2.2e-176 622.5 383 78.1
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 6.4e-176 620.9 382 77.7
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.8e-175 619.4 382 75.9
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 2.4e-175 619.0 376 79.5
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.7e-174 615.5 382 76.7
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 7.8e-174 614.0 381 76.6
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.7e-173 612.8 384 75.3
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.7e-173 612.8 379 75.7
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 5.0e-173 611.3 383 76.0
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.5e-172 609.8 421 71.5
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.9e-172 609.4 384 74.5
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 4.3e-172 608.2 382 74.6
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 5.6e-172 607.8 384 74.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 9.5e-172 607.1 383 76.2
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.6e-171 606.3 383 76.2
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.1e-170 603.6 387 75.7
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-170 603.6 379 76.5
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.1e-170 603.6 379 76.5
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.4e-170 603.2 383 75.7
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.1e-170 602.1 379 76.0
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 3.1e-170 602.1 386 74.1
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 5.2e-170 601.3 380 76.1
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 5.2e-170 601.3 370 77.0
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 6.8e-170 600.9 379 75.7
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.2e-169 600.1 379 75.7
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 1.5e-169 599.7 391 73.4
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 4.4e-169 598.2 379 75.7
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 4.9e-168 594.7 383 73.9
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 6.4e-168 594.3 376 75.0
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.9e-167 592.8 382 74.9
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.6e-166 589.7 377 72.9
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 3.5e-166 588.6 380 75.3
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.0e-165 587.0 381 74.8
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 3.0e-165 585.5 379 72.0
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 3.9e-165 585.1 382 73.6
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.5e-164 582.4 372 74.2
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.5e-164 582.4 372 72.8
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 4.3e-164 581.6 379 74.1
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.6e-164 581.3 380 74.2
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 7.3e-164 580.9 379 71.5
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 9.5e-164 580.5 380 74.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.3e-162 575.9 390 71.5
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.1e-162 575.5 387 74.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 7.5e-161 570.9 382 72.3
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 2.4e-159 565.8 398 70.9
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 9.2e-159 563.9 344 76.7
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 8.6e-157 557.4 363 74.9
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.6e-155 553.1 371 70.9
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-154 549.7 387 70.3
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 4.0e-154 548.5 412 66.0
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 6.8e-154 547.7 360 73.9
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 8.9e-154 547.4 331 81.0
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 5.8e-153 544.7 383 69.2
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 7.6e-153 544.3 383 69.7
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 8.4e-152 540.8 343 76.4
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.0e-149 533.9 384 68.8
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.5e-148 530.0 387 68.7
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 7.3e-148 527.7 383 68.1
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 9.6e-148 527.3 365 71.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 6.2e-147 524.6 372 69.1
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.8e-146 523.1 281 85.1
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 3.1e-146 522.3 338 74.3
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.1e-146 522.3 327 77.7
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 9.0e-146 520.8 375 69.6
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 9.0e-146 520.8 339 74.6
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.5e-145 520.0 392 66.6
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 5.8e-145 518.1 383 66.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 5.8e-145 518.1 381 67.5
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 2.9e-144 515.8 373 67.8
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.9e-144 515.0 382 67.3
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.2e-142 510.4 383 66.8
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 1.6e-142 510.0 371 69.0
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.5e-142 508.8 378 66.1
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 4.6e-142 508.4 382 65.4
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 7.8e-142 507.7 383 65.5
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.3e-141 506.9 382 65.2
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.5e-140 503.4 379 65.2
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.5e-140 502.7 360 69.7
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 7.3e-140 501.1 380 65.8
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.2e-137 493.8 380 64.7
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 9.9e-137 490.7 380 64.7
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.7e-136 490.0 380 64.7
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.4e-135 486.9 380 64.7
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.7e-134 482.6 387 59.7
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.0e-133 480.7 380 63.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.3e-133 479.6 381 62.7
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.3e-133 479.6 381 62.7
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.0e-133 479.2 380 63.4
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 8.7e-133 477.6 253 87.4
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 1.8e-130 469.9 257 85.2
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.5e-129 466.8 382 61.3
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.2e-126 457.2 393 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.8e-125 453.4 366 58.7
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.3e-123 447.2 379 59.9
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 3.7e-123 445.7 253 79.4
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 5.3e-122 441.8 393 54.2
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 3.8e-120 435.6 383 60.8
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.8e-120 435.6 377 56.0
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 7.1e-119 431.4 281 72.2
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.6e-115 420.2 389 53.2
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.1e-106 389.0 224 80.8
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.6e-105 386.3 379 55.1
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.2e-102 377.5 320 60.6
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.2e-91 340.1 302 56.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.7e-83 313.9 539 36.9
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.0e-80 304.7 214 72.0
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.0e-73 280.4 221 63.8
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.5e-73 279.3 147 89.1
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 2.3e-72 276.9 275 53.5
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.0e-69 266.5 144 87.5
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 6.3e-67 258.8 371 38.0
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 8.9e-61 238.4 223 57.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 3.9e-56 223.0 150 76.0
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.5e-55 221.1 134 75.4
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.1e-54 217.2 157 72.0
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.0e-44 184.1 111 73.0
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 4.6e-41 172.9 262 35.5
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.1e-40 169.5 157 53.5
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.5e-31 140.6 92 67.4
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 9.9e-28 128.6 285 29.1
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 4.3e-23 113.2 147 48.3
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 9.0e-21 105.5 59 79.7
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.0e-20 104.4 57 78.9
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.3e-19 101.7 66 72.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.6e-14 84.7 52 67.3
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 4.8e-14 83.2 78 52.6
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.8e-13 81.3 57 66.7
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 75.0


User provided reference genes

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