Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.2e-233 812.0 423 100.0
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 4.4e-218 761.1 423 92.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.3e-217 757.3 423 92.4
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.1e-216 755.0 423 92.0
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.2e-215 753.1 423 92.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.3e-214 749.6 423 91.3
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.1e-213 746.5 423 91.3
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 9.5e-213 743.4 419 90.9
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.1e-208 728.0 420 87.9
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.7e-207 725.3 423 87.7
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.7e-207 725.3 420 87.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 5.9e-207 724.2 422 87.2
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.3e-206 723.0 423 87.5
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.3e-206 722.2 419 87.8
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.5e-205 719.5 423 87.5
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-205 719.2 423 86.8
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 7.3e-205 717.2 422 86.7
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 7.3e-205 717.2 420 86.9
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 9.5e-205 716.8 419 87.1
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.8e-204 715.3 420 86.9
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 87.0
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 86.7
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 87.0
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 8.0e-204 713.8 423 86.1
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.0e-203 713.4 419 87.6
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-203 713.0 422 85.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 86.8
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.8e-203 712.6 420 87.1
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.8e-203 712.6 419 87.6
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 3.0e-203 711.8 420 86.4
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 86.9
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.0e-203 711.4 419 87.4
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 87.0
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 6.8e-203 710.7 423 84.9
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 420 86.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 8.9e-203 710.3 422 86.3
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.2e-202 709.9 419 86.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.2e-202 709.9 423 84.9
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.5e-202 709.5 423 85.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.4
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.0e-202 709.1 422 85.8
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 85.3
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 85.5
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 85.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 4.4e-202 708.0 420 86.0
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 4.4e-202 708.0 420 85.7
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 423 85.3
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 421 85.5
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 85.1
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 422 85.1
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.7e-201 706.1 422 85.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.7e-201 706.1 423 85.3
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.7e-201 706.1 423 85.1
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.2e-201 705.7 422 86.7
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.9e-201 705.3 422 85.8
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.9e-201 705.3 423 85.1
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 85.5
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 4.9e-201 704.5 421 85.0
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 4.9e-201 704.5 420 85.5
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.9e-201 704.5 419 86.2
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 6.4e-201 704.1 423 87.2
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 6.4e-201 704.1 423 85.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 422 84.8
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 421 85.0
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 8.3e-201 703.7 421 85.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-200 703.4 434 84.6
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.4e-200 703.0 422 85.1
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.4e-200 703.0 422 85.8
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 1.4e-200 703.0 422 86.0
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.8e-200 702.6 431 84.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.8e-200 702.6 420 84.8
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 2.4e-200 702.2 422 85.8
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 2.4e-200 702.2 419 85.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.2e-200 701.8 422 84.6
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.1e-200 701.4 420 85.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 4.1e-200 701.4 420 84.8
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 5.4e-200 701.0 422 84.8
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 5.4e-200 701.0 419 85.4
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-199 699.5 422 84.4
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.6
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.6e-199 698.0 420 84.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 4.6e-199 698.0 419 85.2
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 5.9e-199 697.6 420 84.3
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 7.8e-199 697.2 419 84.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 7.8e-199 697.2 422 84.4
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.8e-199 697.2 428 85.3
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.0e-198 696.8 422 84.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.0e-198 696.8 422 84.4
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.0e-198 696.8 423 84.4
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.0e-198 696.8 418 84.4
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.3e-198 696.4 422 84.1
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.3e-198 696.4 422 84.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.7e-198 696.0 419 85.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.7e-198 696.0 438 82.2
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.7e-198 696.0 440 82.3
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.3e-198 695.7 422 84.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.0e-198 695.3 419 85.2
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 3.0e-198 695.3 422 84.6
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 3.9e-198 694.9 422 84.1
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 5.0e-198 694.5 422 84.1
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 6.6e-198 694.1 424 83.5
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 6.6e-198 694.1 419 84.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 8.6e-198 693.7 422 83.9
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 8.6e-198 693.7 422 83.9
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 8.6e-198 693.7 471 77.7
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 8.6e-198 693.7 471 77.7
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 3.3e-197 691.8 423 84.2
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 7.3e-197 690.6 419 83.5
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 7.3e-197 690.6 431 82.4
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 7.3e-197 690.6 419 85.0
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 9.5e-197 690.3 419 83.8
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.8e-196 688.7 452 80.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 6.2e-196 687.6 453 80.4
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.1e-195 686.8 423 82.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-195 686.4 425 82.8
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 5.2e-195 684.5 423 82.0
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.4e-192 674.5 423 83.5
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.7e-188 661.4 401 82.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.0e-187 658.3 469 76.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 5.2e-187 657.9 388 85.8
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 5.8e-186 654.4 392 83.9
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.2e-184 648.7 374 86.6
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.1e-184 647.5 421 80.0
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.5e-183 645.2 389 83.8
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 5.1e-182 641.3 502 69.5
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.6e-180 636.3 363 88.4
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.5e-178 629.8 373 84.7
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.0e-178 629.4 378 83.3
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-175 619.8 416 77.9
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.1e-175 619.4 421 75.3
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.1e-175 619.4 423 79.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 7.8e-175 617.5 400 78.2
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 2.9e-169 599.0 415 74.0
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 5.6e-165 584.7 397 72.8
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 5.6e-165 584.7 410 74.9
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 3.5e-159 565.5 334 84.7
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.9e-157 559.7 310 91.0
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.0e-146 523.1 424 64.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.4e-146 522.3 402 64.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 3.8e-145 518.8 402 66.4
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.1e-135 486.5 459 61.2
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 3.9e-134 482.3 280 88.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.0e-129 467.6 392 67.6
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.1e-127 459.9 282 79.4
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 2.0e-122 443.4 260 85.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-119 433.7 243 91.4
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 2.5e-104 383.3 236 79.7
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 4.1e-99 365.9 225 80.4
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.1e-99 364.8 244 74.6
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.0e-94 351.3 205 86.3
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.2e-82 311.2 288 61.5
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 2.3e-73 280.4 293 51.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.2e-68 263.8 207 67.6
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.6e-63 247.7 147 83.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 6.4e-60 235.7 191 61.3
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 9.3e-51 205.3 133 77.4
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.0e-49 200.3 181 65.2
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 2.6e-45 187.2 114 90.4
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 5.8e-45 186.0 119 76.5
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 9.0e-38 162.2 150 63.3
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.5e-37 161.4 288 35.4
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 3.2e-35 153.7 157 59.2
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 4.2e-35 153.3 157 58.6
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 5.1e-33 146.4 109 70.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 5.8e-29 132.9 191 40.3
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.8e-25 121.3 82 74.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 7.4e-24 115.9 129 55.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.7e-20 104.8 69 75.4
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.1e-14 85.5 50 94.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 2.0e-13 81.3 49 87.8
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.6e-13 80.9 100 52.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 2.9e-12 77.4 43 93.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.9e-09 67.0 37 89.2
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 3.3e-08 63.9 113 36.3
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.4e-08 62.8 111 36.0
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 1.4e-06 58.5 319 22.9


User provided reference genes

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