Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.4e-145 517.7 272 100.0
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.0e-114 417.2 269 82.5
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 5.7e-110 401.4 270 81.9
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.7e-109 398.7 270 80.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.0e-107 392.9 274 78.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 275 78.2
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 5.9e-107 391.3 270 78.9
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.7e-107 391.0 280 77.1
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.3e-106 390.2 281 75.8
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.3e-106 390.2 281 75.8
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.7e-106 389.8 257 81.3
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.9e-106 389.0 274 76.3
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 3.8e-106 388.7 281 75.4
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.0e-106 388.3 269 78.8
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.0e-106 388.3 271 77.9
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.5e-106 387.9 280 76.8
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.5e-106 387.9 280 76.8
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 8.5e-106 387.5 281 75.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.4e-105 386.7 271 77.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.4e-105 386.7 277 76.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 3.2e-105 385.6 272 76.5
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.5e-105 384.8 276 76.1
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 7.2e-105 384.4 272 76.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 7.2e-105 384.4 279 77.8
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 9.4e-105 384.0 280 75.7
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.4e-105 384.0 280 75.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.2e-104 383.6 274 78.1
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.7e-104 382.5 272 75.7
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.1e-104 381.3 263 77.2
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 6.1e-104 381.3 276 75.0
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 6.1e-104 381.3 275 76.0
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 7.9e-104 380.9 280 75.7
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 7.9e-104 380.9 268 79.1
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.0e-103 380.6 277 75.1
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.4e-103 380.2 268 78.0
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.8e-103 379.8 280 74.6
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.8e-103 379.8 277 75.1
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.8e-103 379.8 278 74.1
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.3e-103 379.4 276 73.9
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.0e-103 379.0 281 74.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.9e-103 378.6 269 77.0
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 5.1e-103 378.3 271 74.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.1e-103 378.3 277 75.5
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 5.1e-103 378.3 276 74.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 5.1e-103 378.3 273 76.6
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.7e-103 377.9 276 74.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 8.8e-103 377.5 277 74.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 8.8e-103 377.5 279 73.8
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.0e-102 376.3 276 73.9
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.0e-102 376.3 265 75.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 5.7e-102 374.8 280 75.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.2e-101 372.9 279 74.2
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 73.3
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 275 74.5
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.4e-100 369.4 281 72.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.4e-100 369.4 279 72.0
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 3.1e-100 369.0 273 74.4
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 3.1e-100 369.0 273 74.4
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.1e-100 368.6 279 72.0
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 5.3e-100 368.2 271 75.3
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 5.3e-100 368.2 275 74.2
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 6.9e-100 367.9 271 77.9
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 9.1e-100 367.5 276 73.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 2.6e-99 365.9 278 73.0
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.4e-99 365.5 274 73.4
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.5e-99 365.2 271 74.9
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 5.9e-99 364.8 271 75.3
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 5.9e-99 364.8 271 75.3
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 5.9e-99 364.8 271 75.3
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 5.9e-99 364.8 271 75.3
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.0e-98 364.0 271 74.9
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.0e-98 364.0 271 74.9
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.3e-98 363.6 273 75.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.3e-98 363.6 271 74.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.3e-98 363.6 271 74.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.3e-98 363.6 276 72.8
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-98 363.6 279 72.0
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.3e-98 363.6 274 71.5
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.2e-98 362.8 271 74.5
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.2e-98 362.8 271 74.9
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.2e-98 362.8 271 74.5
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.9e-98 362.5 271 74.5
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.9e-98 362.5 271 74.5
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.8e-98 362.1 279 73.5
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 6.5e-98 361.3 273 72.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 6.5e-98 361.3 274 73.0
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 8.5e-98 360.9 276 70.7
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.1e-97 360.5 281 73.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-97 360.1 271 74.2
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 2.5e-97 359.4 279 72.0
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 3.2e-97 359.0 248 78.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 4.2e-97 358.6 271 74.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 5.5e-97 358.2 278 71.9
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.2e-97 357.8 273 72.5
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.6e-96 356.7 275 74.5
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.1e-96 356.3 266 74.1
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 2.7e-96 355.9 275 71.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 2.7e-96 355.9 275 71.3
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.7e-96 355.9 273 71.8
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 3.6e-96 355.5 273 73.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.7e-96 355.1 276 71.7
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 6.1e-96 354.8 279 73.5
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 7.9e-96 354.4 274 70.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.0e-95 354.0 279 73.1
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 2.3e-95 352.8 284 69.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.3e-95 352.8 279 73.5
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.3e-95 352.8 275 73.1
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.3e-95 352.8 279 72.8
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.0e-95 352.4 217 84.3
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.6e-94 349.4 272 71.0
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.3e-93 347.1 226 82.7
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 4.8e-93 345.1 270 70.4
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.8e-92 343.2 199 85.9
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.1e-92 342.4 279 70.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.2e-91 340.5 229 77.7
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 5.9e-91 338.2 275 69.5
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 5.9e-91 338.2 194 86.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-86 323.9 222 76.1
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 3.1e-84 315.8 199 81.4
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.7e-80 302.0 288 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.0e-79 300.8 213 72.8
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.4e-78 295.4 239 71.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 7.2e-73 278.1 170 81.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 9.5e-65 251.1 193 75.1
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 6.8e-63 245.0 163 77.9
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-61 240.7 134 90.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-60 237.7 161 72.0
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.9e-57 226.9 195 65.6
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.8e-56 223.0 202 66.3
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 8.9e-55 218.0 165 67.3
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 4.0e-47 192.6 272 47.8
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.7e-42 177.2 152 71.1
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.9e-41 173.7 121 72.7
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.1e-36 157.9 96 79.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.1e-36 156.0 241 42.3
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 241 42.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.0e-34 151.4 171 55.0
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.7e-19 100.1 81 70.4
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 8.1e-16 88.6 112 53.6
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.9e-12 77.4 177 31.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.9e-11 72.0 173 30.1
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.1e-08 63.9 38 81.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-07 61.6 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 5.3e-07 59.3 65 52.3
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 4.5e-06 56.2 96 40.6


User provided reference genes

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