Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 0.0e+00 1151.7 599 100.0
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.8e-297 1023.1 620 88.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.5e-264 916.0 617 79.3
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 2.9e-252 875.2 601 77.2
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.2e-245 853.2 603 75.5
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.6e-240 835.5 617 72.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 7.5e-240 833.9 614 73.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.7e-239 832.8 618 72.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.9e-235 819.3 630 72.4
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.6e-234 816.2 622 70.3
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.6e-234 815.1 628 70.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 8.1e-234 813.9 612 71.6
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 3.1e-233 812.0 617 70.3
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 5.2e-233 811.2 628 69.9
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.2e-233 811.2 618 70.1
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 7.5e-232 807.4 612 70.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.2e-231 805.8 618 71.2
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.4e-230 803.1 628 69.7
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.4e-230 802.4 619 69.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 5.4e-230 801.2 614 70.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.7e-229 798.9 627 69.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.7e-228 796.2 613 70.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 2.3e-228 795.8 612 69.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.6e-226 789.6 612 68.6
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.1e-226 789.3 627 68.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.1e-225 786.9 618 69.7
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.1e-225 785.4 629 66.8
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.0e-224 782.7 619 69.5
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 4.9e-223 778.1 625 68.0
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-222 776.9 637 67.2
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.4e-222 775.8 618 68.3
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.4e-222 774.6 655 66.1
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 5.4e-222 774.6 628 68.5
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 3.0e-220 768.8 608 69.1
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.6e-219 764.6 611 67.9
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.4e-217 760.0 613 67.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 6.9e-217 757.7 615 68.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 7.6e-216 754.2 630 66.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.9e-215 752.3 604 67.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.4e-214 748.0 612 66.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.0e-213 744.6 651 63.7
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.8e-213 744.2 618 66.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.0e-212 743.8 620 65.0
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.3e-212 742.7 593 68.5
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 7.3e-211 737.6 618 65.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.1e-209 732.3 618 65.5
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.0e-209 731.9 617 65.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 5.3e-209 731.5 610 66.9
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.5e-208 729.9 642 64.0
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.0e-208 729.6 623 65.2
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 3.4e-208 728.8 659 62.4
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 4.5e-208 728.4 620 65.2
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 7.6e-208 727.6 619 64.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 7.6e-208 727.6 617 65.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.8e-207 725.3 628 63.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.4e-206 721.5 615 65.0
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 7.1e-206 721.1 618 65.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.1e-205 719.5 639 62.1
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.6e-205 718.4 615 64.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.5e-203 712.6 614 64.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 4.3e-203 711.8 614 64.2
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.6e-202 709.9 621 63.3
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.1e-202 709.5 614 64.0
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-202 709.1 625 64.2
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 4.0e-201 705.3 613 63.9
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-200 702.6 620 63.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.0e-199 700.7 632 62.7
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.5e-199 698.0 624 62.0
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.9e-198 696.4 567 66.7
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.5e-198 696.0 620 63.9
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.5e-198 694.9 624 62.2
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-198 694.9 622 62.5
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-197 693.3 622 62.4
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.7e-197 692.6 619 63.0
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 4.6e-197 691.8 624 62.0
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 6.0e-197 691.4 607 63.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-196 690.6 595 64.2
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.1e-195 687.2 622 61.9
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 8.2e-194 681.0 632 60.4
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 8.2e-194 681.0 622 61.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 5.8e-192 674.9 606 62.2
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 5.8e-192 674.9 554 66.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.0e-191 674.1 648 59.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 8.4e-191 671.0 556 67.1
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 8.4e-191 671.0 506 69.4
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.2e-190 669.1 588 63.6
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.2e-190 668.7 641 60.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 9.3e-190 667.5 533 66.8
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.7e-186 655.6 562 64.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.1e-185 652.5 573 63.4
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 9.0e-185 651.0 630 60.6
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.0e-183 647.5 626 60.4
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.8e-183 645.6 621 60.2
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 8.5e-183 644.4 618 60.0
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 5.5e-182 641.7 629 58.2
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 3.3e-179 632.5 625 58.4
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.0e-176 623.2 618 57.0
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.6e-176 622.9 626 58.9
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-173 614.0 620 56.9
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-170 603.6 528 63.6
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.0e-167 592.0 615 54.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.5e-166 590.5 557 59.4
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 9.1e-161 571.2 583 57.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.8e-156 557.0 339 82.9
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.5e-155 553.9 519 59.5
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.5e-152 542.7 339 80.2
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.5e-152 542.7 398 71.4
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.1e-149 531.9 644 51.4
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.0e-145 518.5 318 80.5
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-140 504.6 337 76.0
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.0e-140 503.1 602 51.0
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 5.4e-137 492.3 517 54.5
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.0e-135 485.7 505 57.2
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.6e-134 482.3 435 60.7
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-131 473.8 615 48.1
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 9.5e-118 428.3 400 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 5.1e-103 379.4 637 40.0
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-97 360.9 377 54.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 6.0e-96 355.9 373 57.4
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.0e-95 355.1 277 69.3
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.9e-90 336.3 309 63.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.6e-85 321.2 620 37.4
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.1e-84 318.5 196 85.2
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-83 313.9 365 50.4
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-82 311.6 326 56.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.9e-78 297.7 617 36.3
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 4.8e-77 293.1 231 66.2
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.0e-71 275.4 242 62.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.4e-68 265.0 277 55.6
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.8e-68 264.6 225 59.6
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.2e-66 257.7 278 55.0
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 5.1e-63 246.5 275 55.6
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-58 231.9 252 55.6
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.3e-53 215.3 732 29.0
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.4e-52 211.1 275 49.5
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 9.1e-52 209.1 272 51.1
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.6e-51 207.6 279 47.3
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-50 205.7 276 44.9
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-49 202.2 263 47.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.6e-48 198.4 106 94.3
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-44 185.3 119 78.2
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.1e-44 184.1 149 69.1
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.2e-41 172.9 204 51.0
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.6e-40 170.6 110 79.1
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 8.0e-40 169.5 274 41.2
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.0e-39 167.2 272 40.1
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.6e-38 164.5 320 36.6
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-36 158.3 213 51.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.1e-36 157.1 394 33.5
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.2e-33 147.5 236 40.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.5e-33 146.0 153 57.5
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.6e-32 145.2 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 2.7e-32 144.4 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.3e-31 141.4 81 88.9
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-30 138.3 167 53.3
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.8e-28 131.7 126 60.3
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-27 128.6 172 45.9
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.3e-26 124.8 144 51.4
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.2e-24 119.0 341 32.6
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 2.1e-24 118.2 117 56.4
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.8e-24 117.9 173 43.4
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.1e-24 116.7 162 46.9
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 4.4e-22 110.5 122 45.1
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 4.9e-21 107.1 122 52.5
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 7.0e-20 103.2 250 31.2
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.3e-18 99.0 142 47.9
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 3.3e-17 94.4 77 62.3
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 4.4e-14 84.0 119 48.7
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 3.3e-09 67.8 64 60.9
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 7.3e-09 66.6 83 53.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 2.1e-08 65.1 50 66.0
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 1.1e-07 62.8 37 73.0
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-07 62.0 89 49.4
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.8e-07 62.0 47 59.6
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 6.8e-07 60.1 38 86.8
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 8.9e-07 59.7 39 74.4
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.0e-06 58.5 38 84.2
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 2.6e-06 58.2 100 41.0
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 2.6e-06 58.2 73 46.6


User provided reference genes

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