Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 6.2e-70 267.3 133 100.0
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 8.4e-67 256.9 133 95.5
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 5.5e-66 254.2 133 94.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.7e-65 251.9 133 93.2
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.7e-65 251.9 133 93.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.8e-64 249.2 133 91.7
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.9e-64 248.1 133 91.7
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 3.9e-64 248.1 132 91.7
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 5.1e-64 247.7 131 91.6
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.1e-63 246.5 133 93.2
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.9e-63 245.7 133 91.0
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.5e-63 245.4 132 90.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.3e-63 245.0 133 90.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.3e-63 245.0 131 90.1
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 4.3e-63 244.6 131 90.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.7e-63 244.2 133 89.5
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 7.4e-63 243.8 131 90.1
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 9.7e-63 243.4 131 90.1
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 89.3
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.1
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.1
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.3e-62 243.0 130 90.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.6e-62 242.7 133 88.0
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 89.3
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.6e-62 242.7 132 90.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 3.7e-62 241.5 131 89.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.7e-62 241.5 131 88.5
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 4.8e-62 241.1 132 90.2
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 4.8e-62 241.1 133 87.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 6.3e-62 240.7 133 86.5
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 88.5
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 88.5
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 88.5
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 88.5
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 88.5
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 88.7
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.4e-61 239.6 130 90.8
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-61 239.6 131 87.8
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.4e-61 239.6 129 89.9
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.4e-61 238.8 130 89.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 88.4
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 3.1e-61 238.4 133 87.2
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 3.1e-61 238.4 130 88.5
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 5.3e-61 237.7 133 86.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.9e-61 237.3 131 87.8
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 9.0e-61 236.9 130 88.5
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.2e-60 236.5 131 89.3
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.5e-60 236.1 133 85.7
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.5e-60 236.1 131 87.8
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 4.5e-60 234.6 130 86.9
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 5.9e-60 234.2 129 87.6
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 5.9e-60 234.2 132 86.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 7.7e-60 233.8 133 87.2
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-59 232.6 131 87.0
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.7e-59 232.6 131 87.0
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 2.9e-59 231.9 131 85.5
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 5.0e-59 231.1 133 85.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.5e-59 230.7 131 86.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.5e-59 230.7 131 86.3
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.5e-59 230.3 131 85.5
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.1e-58 229.9 125 88.8
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 129 86.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.4e-58 229.6 131 84.7
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.5e-58 228.8 130 84.6
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.5e-58 228.8 130 84.6
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 130 84.6
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.2e-58 228.0 131 83.2
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 5.5e-58 227.6 130 83.8
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 9.4e-58 226.9 130 85.4
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 9.4e-58 226.9 129 85.3
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-57 226.5 130 83.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.7e-57 225.3 131 83.2
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.7e-57 225.3 131 83.2
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.6e-57 224.9 154 74.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 3.6e-57 224.9 130 84.6
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.6e-57 224.9 133 84.2
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 4.6e-57 224.6 131 81.7
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 7.9e-57 223.8 130 84.6
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 7.9e-57 223.8 130 84.6
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.4e-56 223.0 128 83.6
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.4e-56 223.0 133 82.7
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.4e-56 223.0 130 84.6
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.3e-56 222.2 129 82.2
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.3e-56 222.2 130 83.1
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.9e-56 221.5 130 83.1
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 5.1e-56 221.1 130 84.6
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 6.7e-56 220.7 130 83.1
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 1.5e-55 219.5 125 84.8
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.5e-55 219.5 186 64.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.5e-55 218.8 130 83.1
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.8e-54 215.3 132 79.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.8e-54 214.5 128 80.5
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.3e-54 214.2 131 80.2
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.9e-53 210.7 162 69.1
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 9.1e-53 210.3 132 77.3
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.0e-52 209.1 162 68.5
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.2e-50 201.8 129 76.0
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.6e-49 198.4 131 72.5
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 4.7e-49 198.0 195 55.9
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.4e-48 196.4 126 77.0
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.4e-48 196.4 129 72.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 8.8e-48 193.7 131 77.1
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 8.8e-48 193.7 131 77.9
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 3.1e-45 185.3 133 75.9
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.1e-45 184.9 131 74.0
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 4.1e-45 184.9 132 62.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.3e-45 184.5 130 63.1
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.0e-43 180.3 130 66.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.9e-43 178.7 123 66.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 8.5e-43 177.2 102 81.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 2.6e-39 165.6 116 68.1
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 4.4e-39 164.9 88 94.3
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.7e-39 164.5 138 67.4
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 7.4e-39 164.1 88 93.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.2e-38 162.5 87 93.1
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.2e-38 162.5 130 58.5
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-36 156.0 92 82.6
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.0e-36 156.0 88 89.8
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 3.5e-36 155.2 88 87.5
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.2e-34 148.7 79 86.1
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.2e-34 147.5 85 80.0
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 8.0e-33 144.1 135 61.5
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-32 142.9 85 78.8
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 3.0e-32 142.1 86 81.4
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 6.8e-32 141.0 86 80.2
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 6.8e-32 141.0 86 80.2
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-31 139.4 87 79.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-31 139.4 85 81.2
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.2e-30 136.0 71 88.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.1e-29 132.1 75 81.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 4.1e-29 131.7 100 71.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-27 126.3 89 74.2
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.7e-27 126.3 80 81.2
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-27 125.6 68 83.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.7e-23 111.3 65 76.9
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.3e-19 100.1 86 58.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.9e-19 99.0 86 62.8
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.0e-16 90.5 68 63.2
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 3.0e-16 89.0 46 84.8
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.7e-15 84.7 45 80.0
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 2.4e-13 79.3 55 76.4
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-09 66.6 47 72.3
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 4.0e-08 62.0 42 73.8
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.2e-07 60.5 41 65.9


User provided reference genes

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