Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 2102.4 1076 100.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1809.7 1082 84.5
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1734.2 1166 77.7
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1667.1 1078 77.1
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1662.9 1102 79.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1080 76.9
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1642.5 1078 76.8
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1640.2 1080 76.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1077 75.4
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1616.3 1081 75.5
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1615.1 965 83.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1080 74.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1600.9 1000 78.8
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1600.5 1078 74.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1080 73.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1597.4 1085 74.8
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1595.1 1076 74.6
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1589.3 1076 73.7
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1103 74.0
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1582.4 1083 73.7
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1582.0 1079 73.9
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1575.5 1120 72.6
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1571.6 1079 73.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1571.6 1079 72.9
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1569.7 1079 72.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1569.7 1089 73.2
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1568.1 1079 72.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1567.7 1078 72.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1567.7 1079 72.8
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1085 73.1
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1563.5 1079 72.8
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1559.3 1081 73.5
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1556.6 1078 73.4
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1552.7 1078 71.8
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1552.7 1121 71.0
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1552.3 1076 72.1
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1546.2 1000 75.4
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1545.4 1002 75.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1543.5 1076 71.9
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1152 69.4
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1539.6 1079 72.2
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1533.9 1084 71.5
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1532.7 1091 70.6
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1532.3 1090 71.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1529.2 1079 71.5
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1525.4 1081 72.1
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1525.0 1076 72.4
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1523.1 1079 71.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1520.0 1074 71.1
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1519.2 1078 71.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1518.4 1076 71.9
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1509.6 1076 71.9
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1503.4 971 75.9
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1501.1 1083 71.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1498.4 1078 70.0
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1498.0 1085 70.9
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1491.9 1081 70.9
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1489.6 1081 70.9
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1482.2 1101 69.6
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1479.2 1081 69.8
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1475.3 1082 69.8
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1464.5 988 72.6
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1464.1 953 77.4
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1461.4 1078 69.7
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1459.9 1103 68.3
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1459.5 948 76.5
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1458.4 1087 69.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1446.0 973 78.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1441.4 1229 63.1
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1441.4 978 73.7
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1434.1 998 71.5
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1428.7 1044 68.5
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1426.4 947 74.3
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1411.4 1024 69.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1407.9 1003 69.7
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1406.7 1200 63.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1398.6 1078 67.1
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1342.8 1128 64.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1325.8 978 66.1
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1278.1 1141 62.1
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1275.0 868 73.6
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1268.8 1097 62.3
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1268.1 895 73.2
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1267.7 1040 61.8
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1243.8 1043 60.4
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1241.9 1076 59.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1148.7 1019 55.3
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1109.0 1106 57.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.0e-308 1063.5 1010 54.5
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 9.5e-302 1040.4 751 69.0
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.3e-298 1030.0 658 76.4
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.3e-295 1020.0 1080 51.2
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 2.4e-289 999.2 1017 50.9
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.3e-282 976.9 999 53.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.6e-253 880.2 621 72.0
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 6.1e-248 861.7 592 73.3
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.2e-243 847.4 584 72.8
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.3e-207 726.9 500 73.6
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 2.8e-200 703.4 518 69.9
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.6e-198 696.8 473 72.5
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.3e-181 641.3 506 67.6
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.7e-181 639.8 822 48.2
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.3e-177 626.7 456 68.4
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.8e-175 620.9 410 74.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.4e-167 594.7 628 53.8
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.3e-162 577.4 383 75.7
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.0e-150 537.7 397 67.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.3e-145 520.4 354 74.6
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.9e-133 480.7 345 73.9
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 1.0e-130 472.2 328 72.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.8e-128 464.2 392 62.8
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.1e-127 460.7 285 78.9
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.5e-126 456.8 315 75.6
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.4e-111 407.9 294 67.3
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.4e-108 396.0 823 36.5
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.5e-100 370.2 196 88.8
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.1e-95 352.8 241 71.4
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.0e-82 310.8 222 72.1
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.2e-81 309.3 292 51.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 5.1e-69 267.3 142 89.4
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.4e-58 232.6 185 65.9
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 3.8e-56 224.6 178 69.7
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 1.5e-52 212.6 187 62.6
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 4.9e-48 197.6 105 88.6
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.4e-47 194.1 150 62.7
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-37 162.2 203 47.8
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.9e-37 161.4 127 61.4
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.2e-35 154.1 147 54.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-34 152.9 112 63.4
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.5e-33 147.9 130 53.1
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.3e-32 146.4 100 69.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.9e-31 142.5 94 75.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 6.7e-29 134.0 90 70.0
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 7.4e-28 130.6 97 67.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.5e-25 122.9 129 58.9
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.5e-25 122.9 129 58.9
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 3.4e-25 121.7 100 59.0
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.0e-24 120.2 86 66.3
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.1e-23 116.7 128 54.7
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.6e-19 102.8 73 68.5
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.2e-19 102.4 190 35.3
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.7e-16 92.8 67 67.2
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.2e-16 92.4 69 62.3
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 1.8e-13 82.8 54 72.2
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 3.9e-13 81.6 109 45.9
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.8e-11 75.5 50 72.0
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.1e-10 72.0 60 58.3
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.2e-09 70.1 55 63.6
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 2.9e-08 65.5 55 60.0
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 44 68.2
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 44 68.2
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 44 68.2
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 44 68.2
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 7.2e-07 60.8 43 67.4
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-06 59.7 34 73.5
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 2.1e-06 59.3 44 63.6
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 2.7e-06 58.9 45 62.2


User provided reference genes

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