Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 0.0e+00 1439.9 735 100.0
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.4e-283 979.5 734 71.5
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.1e-259 898.7 712 65.9
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.0e-258 896.0 704 66.2
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 2.6e-258 895.6 726 64.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 2.2e-257 892.5 710 64.4
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.4e-256 889.8 693 67.1
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 7.0e-256 887.5 697 65.7
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 8.6e-254 880.6 705 65.7
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 4.3e-253 878.2 734 63.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 7.3e-253 877.5 706 64.7
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 4.7e-252 874.8 709 64.2
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 9.9e-250 867.1 711 64.6
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.9e-249 865.5 732 62.6
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 6.4e-249 864.4 720 63.2
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.6e-247 859.8 692 64.9
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 2.7e-247 859.0 691 65.0
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 3.5e-247 858.6 725 62.9
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 4.6e-247 858.2 728 62.8
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 3.9e-246 855.1 699 62.9
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 5.6e-245 851.3 694 63.8
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 9.5e-245 850.5 694 64.0
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.6e-244 849.7 709 62.9
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.6e-244 848.6 701 64.8
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.1e-243 847.0 694 63.8
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 4.0e-243 845.1 696 62.9
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 8.4e-241 837.4 719 61.6
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 8.4e-241 837.4 737 61.6
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.4e-240 836.6 687 64.5
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 4.1e-240 835.1 722 60.9
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.1e-240 835.1 724 60.9
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 5.4e-240 834.7 660 66.1
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 5.4e-240 834.7 710 62.4
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 5.4e-240 834.7 722 61.2
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.1e-239 832.8 729 60.4
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.7e-238 829.7 709 62.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 9.6e-237 823.9 700 60.7
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.8e-235 819.7 711 61.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 3.1e-235 818.9 719 60.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 5.2e-235 818.1 730 60.7
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 5.8e-234 814.7 702 60.7
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 7.6e-234 814.3 700 61.4
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.2e-233 812.8 703 61.3
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.9e-233 812.4 700 61.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.9e-232 809.7 699 61.2
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.4e-232 809.3 703 61.0
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 3.5e-231 805.4 705 61.8
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.7e-230 803.1 700 60.4
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 2.3e-230 802.7 693 61.0
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 8.7e-230 800.8 694 61.2
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.5e-229 800.0 706 60.2
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.9e-229 799.7 697 61.3
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 2.5e-229 799.3 695 60.4
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 4.3e-229 798.5 712 59.8
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.6e-228 796.6 704 59.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 8.1e-228 794.3 794 56.0
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 4.0e-227 792.0 733 59.1
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 4.0e-227 792.0 687 61.0
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.6e-226 789.3 699 60.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.0e-222 777.3 776 56.3
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.3e-222 776.2 792 54.7
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.9e-221 773.1 700 59.3
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 1.3e-220 770.4 626 63.4
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 3.7e-220 768.8 705 59.0
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.3e-219 765.0 698 59.3
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 2.2e-217 759.6 635 62.7
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 7.9e-215 751.1 694 59.1
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 8.2e-212 741.1 741 56.8
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.9e-208 729.9 568 66.9
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.2e-207 727.2 529 67.9
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 2.7e-207 726.1 700 57.4
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 3.3e-205 719.2 576 64.1
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.3e-204 717.2 741 55.1
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.5e-200 703.0 714 53.8
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.3e-200 701.0 750 53.5
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.4e-197 691.4 703 56.5
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.3e-196 690.6 560 63.6
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 7.7e-194 681.4 525 66.7
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.7e-188 662.5 496 68.3
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 8.2e-188 661.4 718 54.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.1e-187 659.4 555 62.0
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.4e-186 656.0 697 52.1
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 4.4e-181 639.0 445 71.9
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 5.0e-177 625.5 728 49.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.5e-176 624.0 567 59.1
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.5e-173 614.0 740 45.7
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 7.5e-165 585.1 719 45.6
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.4e-155 554.3 717 43.9
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 4.0e-150 536.2 791 43.7
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.9e-148 530.0 402 66.9
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 8.6e-145 518.5 490 56.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 7.3e-144 515.4 366 71.9
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 3.1e-142 510.0 349 73.4
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.2e-142 509.2 492 55.9
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 6.4e-132 475.7 406 58.6
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.7e-130 470.3 378 65.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.5e-130 469.9 381 64.8
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.1e-127 458.8 378 64.0
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 3.2e-123 446.8 761 37.8
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 2.4e-118 430.6 845 35.1
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.5e-114 416.8 360 58.1
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.0e-110 403.3 708 37.3
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 2.9e-108 397.1 314 65.9
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 9.3e-99 365.5 311 60.8
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 4.8e-95 353.2 736 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.6e-93 347.4 345 55.7
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.6e-87 328.2 349 52.4
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 6.9e-78 296.2 223 70.4
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.5e-72 278.5 250 56.4
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.7e-72 276.6 194 71.1
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.5e-69 267.3 206 67.5
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.7e-64 250.0 266 54.1
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 7.4e-64 249.6 261 54.4
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 6.3e-63 246.5 653 29.7
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.1e-62 245.7 323 41.8
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.2e-59 233.8 163 69.3
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 7.0e-54 216.5 174 63.2
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 2.7e-50 204.5 207 56.0
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 4.8e-47 193.7 168 61.3
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.5e-45 187.6 176 54.5
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 5.7e-40 170.2 156 52.6
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 4.4e-32 144.1 130 56.2
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.0e-28 132.9 143 53.8
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 6.2e-26 123.6 139 51.8
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.0e-26 123.2 164 50.0
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.1e-25 122.9 150 48.0
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 5.8e-24 117.1 152 46.7
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.1e-21 108.6 141 46.1
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.9e-15 87.4 66 66.7
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.6e-11 73.9 51 64.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.6e-11 73.2 76 51.3
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.8e-09 68.9 37 94.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.4e-09 68.6 81 51.9
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 1.2e-08 66.2 71 56.3


User provided reference genes

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