Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01032 Erythranthe guttata HOM05D002009 ORTHO05D005728 6.6e-173 610.5 290 100.0
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 9.6e-140 500.4 282 87.6
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 2.2e-112 409.5 265 75.8
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 6.7e-109 397.9 271 72.7
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 1.1e-103 380.6 266 68.8
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 3.2e-103 379.0 281 67.3
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 4.2e-103 378.6 255 70.6
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 5.5e-103 378.3 269 67.7
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 5.5e-103 378.3 269 67.7
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 5.5e-103 378.3 266 68.0
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 5.5e-103 378.3 272 67.3
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 5.5e-103 378.3 279 66.3
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 7.2e-103 377.9 265 69.1
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 7.2e-103 377.9 272 67.6
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 1.2e-102 377.1 266 68.8
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 2.1e-102 376.3 257 70.4
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 2.7e-102 375.9 266 67.3
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 3.6e-102 375.6 266 67.3
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 3.6e-102 375.6 269 67.3
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 3.6e-102 375.6 255 70.2
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 4.6e-102 375.2 266 67.7
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 6.1e-102 374.8 316 61.7
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 6.1e-102 374.8 266 68.0
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 7.9e-102 374.4 266 67.3
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 1.3e-101 373.6 316 61.4
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 1.8e-101 373.2 319 59.9
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 1.8e-101 373.2 301 62.1
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 1.8e-101 373.2 266 66.2
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 2.3e-101 372.9 272 66.9
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 2.3e-101 372.9 316 60.1
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 3.0e-101 372.5 266 68.0
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 1.1e-100 370.5 283 64.0
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 1.9e-100 369.8 266 66.9
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 2.5e-100 369.4 266 68.0
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 2.5e-100 369.4 305 62.0
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 2.5e-100 369.4 305 62.0
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 4.3e-100 368.6 255 69.4
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 5.7e-100 368.2 274 65.7
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 7.4e-100 367.9 266 67.3
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 9.7e-100 367.5 266 66.5
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 9.7e-100 367.5 232 72.8
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 9.7e-100 367.5 297 61.3
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.6e-99 366.7 266 67.3
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 1.6e-99 366.7 276 65.9
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 1.1e-98 364.0 265 66.4
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 1.1e-98 364.0 271 66.8
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 2.4e-98 362.8 269 66.2
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 4.1e-98 362.1 255 69.4
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 4.1e-98 362.1 265 65.3
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 6.9e-98 361.3 317 58.7
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 6.9e-98 361.3 319 58.6
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 9.0e-98 360.9 271 67.5
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 1.2e-97 360.5 338 56.8
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 2.0e-97 359.8 299 61.2
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 2.0e-97 359.8 265 65.3
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 2.6e-97 359.4 257 66.9
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 7.7e-97 357.8 311 59.2
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 1.0e-96 357.5 297 60.9
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 1.3e-96 357.1 257 67.3
BcaC01g02652 Brassica carinata HOM05D002009 ORTHO05D005728 2.2e-96 356.3 297 60.6
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 2.2e-96 356.3 297 60.6
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 2.2e-96 356.3 297 60.6
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 2.9e-96 355.9 277 65.3
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 2.9e-96 355.9 266 64.7
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 3.8e-96 355.5 255 65.9
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 3.8e-96 355.5 255 68.6
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 6.5e-96 354.8 257 66.9
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 8.5e-96 354.4 255 67.1
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 1.1e-95 354.0 255 66.7
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 1.1e-95 354.0 297 60.3
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 1.9e-95 353.2 268 65.7
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 2.5e-95 352.8 257 65.8
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 4.2e-95 352.1 257 68.1
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 5.5e-95 351.7 257 67.7
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 5.5e-95 351.7 256 68.4
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 7.2e-95 351.3 255 66.3
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 9.4e-95 350.9 317 59.9
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 1.6e-94 350.1 266 64.3
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 3.6e-94 349.0 286 60.1
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 6.1e-94 348.2 261 64.4
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 6.1e-94 348.2 255 67.8
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 6.1e-94 348.2 261 63.6
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 7.9e-94 347.8 257 64.6
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 6.7e-93 344.7 257 65.4
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 1.1e-92 344.0 266 63.9
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 5.7e-92 341.7 273 62.3
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 9.7e-92 340.9 267 63.3
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 1.4e-90 337.0 267 62.9
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 6.9e-90 334.7 270 61.9
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 2.6e-89 332.8 257 63.8
DCAR_001197 Daucus carota HOM05D002009 ORTHO05D005728 7.4e-84 314.7 252 59.5
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 9.1e-82 307.8 310 53.9
SEGI_14345 Sequoiadendron giganteum HOM05D002009 ORTHO05D005728 9.1e-82 307.8 225 64.4
CSS0023852 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 3.6e-78 295.8 221 64.3
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 2.6e-76 289.7 288 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 1.6e-73 280.4 231 59.3
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 2.2e-72 276.6 211 64.9
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 6.5e-72 275.0 225 57.8
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 8.8e-69 264.6 202 58.4
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 9.1e-66 254.6 194 58.8
Psat3g068200 Pisum sativum HOM05D002009 ORTHO05D005728 2.9e-64 249.6 165 70.3
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 8.5e-64 248.1 154 74.7
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 9.5e-63 244.6 265 45.7
Aqoxy2G03871 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 5.0e-56 222.2 268 46.6
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 3.2e-50 203.0 232 46.1
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 4.7e-46 189.1 269 41.3
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 4.0e-45 186.0 266 43.2
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 6.4e-43 178.7 232 41.4
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 2.4e-42 176.8 233 42.1
Nitab4.5_0003690g0040 Nicotiana tabacum HOM05D002009 ORTHO05D005728 3.9e-32 142.9 85 78.8
AL3G45200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 1.1e-29 134.8 122 55.7
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 9.9e-28 128.3 202 36.6
Nitab4.5_0000062g0490 Nicotiana tabacum HOM05D002009 ORTHO05D005728 2.2e-27 127.1 85 72.9
BcaC01g02650 Brassica carinata HOM05D002009 ORTHO05D005728 4.1e-26 122.9 115 52.2
MD15G1136200 Malus domestica HOM05D002009 ORTHO05D030069 7.8e-25 118.6 106 59.4
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-17 92.8 52 76.9
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-13 81.6 78 52.6
SMO232G0106 Selaginella moellendorffii HOM05D002009 ORTHO05D030069 1.8e-13 80.9 129 35.7
Nitab4.5_0000062g0470 Nicotiana tabacum HOM05D002009 ORTHO05D005728 5.8e-12 75.9 98 43.9
Nitab4.5_0003690g0050 Nicotiana tabacum HOM05D002009 ORTHO05D005728 6.4e-11 72.4 95 45.3
AL4G19520 Arabidopsis lyrata HOM05D002850 ORTHO05D003285 1.1e-10 71.6 44 70.5
SMO232G0095 Selaginella moellendorffii HOM05D002009 ORTHO05D030069 1.9e-10 70.9 122 34.4
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 2.1e-09 67.4 187 27.3
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 7.9e-09 65.5 184 29.9
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 3.0e-08 63.5 156 28.2
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 3.0e-08 63.5 154 30.5
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 3.9e-08 63.2 153 28.8
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 6.7e-08 62.4 189 28.6
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 6.7e-08 62.4 151 31.1
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 1.1e-07 61.6 155 27.1
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 1.1e-07 61.6 189 28.0
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 1.9e-07 60.8 157 28.0
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 2.5e-07 60.5 154 28.6
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 5.6e-07 59.3 161 27.3
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 7.4e-07 58.9 154 29.9


User provided reference genes

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