Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 0.0e+00 1150.6 587 100.0
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 0.0e+00 1107.8 587 96.3
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.1e-275 953.0 600 80.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.1e-270 936.4 599 78.8
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.7e-260 902.5 593 76.7
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 9.0e-254 880.2 600 74.7
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 3.8e-252 874.8 599 74.0
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.9e-251 872.5 606 72.9
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 9.3e-251 870.2 606 72.9
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 3.5e-250 868.2 603 73.3
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 7.4e-248 860.5 606 71.8
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-247 859.8 599 72.5
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 6.2e-247 857.4 618 71.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-242 843.2 605 70.1
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.0e-241 840.1 605 69.4
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.3e-241 839.7 627 69.4
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 5.7e-240 834.3 641 68.0
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.6e-239 832.8 601 70.2
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.6e-239 832.8 606 70.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.2e-239 830.9 607 70.5
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 8.2e-239 830.5 602 70.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.8e-237 824.3 605 70.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.9e-235 819.3 607 68.7
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 9.3e-235 817.0 600 69.0
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.5e-234 815.1 605 68.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-233 812.8 588 70.6
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 6.7e-233 810.8 604 68.0
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 8.7e-233 810.4 592 68.2
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 8.2e-231 803.9 603 68.5
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.4e-230 802.4 606 67.5
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 3.1e-230 802.0 605 67.9
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.5e-227 792.3 606 67.2
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.2e-227 792.0 605 66.9
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.4e-225 786.6 592 67.9
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.1e-224 783.5 583 68.3
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 7.4e-224 780.8 601 65.7
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.2e-223 779.2 606 65.2
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.8e-222 776.2 591 66.3
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 4.1e-222 775.0 593 66.1
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 9.1e-222 773.9 601 65.4
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.0e-221 772.7 592 66.4
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.6e-221 772.3 592 66.2
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 4.5e-221 771.5 542 73.1
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 5.9e-221 771.2 599 65.8
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 5.9e-221 771.2 593 66.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 5.9e-221 771.2 590 66.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.7e-220 769.6 600 64.5
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 1.7e-220 769.6 590 66.3
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 5.0e-220 768.1 602 63.5
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.4e-219 766.5 614 63.8
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.9e-219 766.1 593 64.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 7.2e-219 764.2 601 65.1
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.6e-218 763.1 592 65.9
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 2.7e-218 762.3 595 66.2
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.7e-218 761.5 598 64.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.1e-218 761.1 600 64.2
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.4e-217 760.0 596 65.4
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.8e-217 759.6 597 65.3
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 3.9e-217 758.4 595 64.4
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 4.4e-216 755.0 596 65.1
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.4e-216 755.0 597 65.2
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 4.4e-216 755.0 604 64.4
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 4.4e-216 755.0 591 64.6
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 9.7e-216 753.8 564 67.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.2e-215 752.7 605 64.3
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.2e-215 752.7 593 64.2
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 6.3e-215 751.1 588 65.5
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.8e-214 749.6 589 64.9
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.4e-214 749.2 592 64.7
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 2.4e-214 749.2 614 62.4
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.1e-214 748.4 592 64.7
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 4.1e-214 748.4 598 63.9
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 5.3e-214 748.0 596 63.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 9.1e-214 747.3 586 65.0
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.6e-213 745.7 592 64.5
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 5.0e-212 741.5 608 64.3
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 8.5e-212 740.7 592 64.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 3.6e-210 735.3 608 63.7
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.0e-209 733.8 600 61.8
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 3.3e-208 728.8 601 62.1
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 3.3e-208 728.8 604 62.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 3.3e-208 728.8 604 63.1
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.3e-207 726.9 600 63.2
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 6.3e-207 724.5 522 71.6
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.4e-206 723.4 553 65.8
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 3.1e-206 722.2 596 63.3
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.3e-204 716.8 608 61.3
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.5e-203 712.6 587 62.7
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.2e-203 711.8 621 60.4
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 4.2e-203 711.8 604 61.1
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.6e-202 709.9 612 63.1
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 6.1e-202 708.0 588 61.6
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 8.0e-202 707.6 608 61.2
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 2.3e-201 706.1 592 60.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.2e-201 704.9 588 61.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.5e-200 703.4 611 61.0
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.6e-200 702.6 595 61.2
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.2e-199 699.5 603 59.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.2e-199 699.5 592 60.6
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 9.1e-198 694.1 611 60.6
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 7.7e-197 691.0 604 60.4
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.0e-196 690.6 594 62.1
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.5e-196 688.0 588 60.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.9e-195 686.4 573 61.6
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 4.2e-195 685.3 588 59.9
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.2e-195 685.3 588 59.9
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 8.0e-194 681.0 599 59.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.0e-193 680.6 588 59.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 2.3e-193 679.5 587 61.2
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 4.0e-193 678.7 599 59.4
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 9.8e-192 674.1 588 59.4
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.8e-191 672.5 578 60.9
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.3e-188 663.7 582 59.8
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.8e-185 653.3 586 58.9
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 8.9e-185 651.0 604 58.8
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 5.6e-179 631.7 601 55.7
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 9.8e-176 620.9 598 55.4
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.7e-175 619.0 594 54.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.9e-172 609.0 589 57.2
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 4.7e-170 602.1 592 53.4
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 4.1e-166 589.0 587 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.0e-164 582.8 624 51.4
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.2e-157 560.8 434 65.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.7e-151 540.4 468 60.3
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.5e-147 526.6 592 49.8
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 9.6e-147 524.6 397 69.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 3.6e-138 496.1 729 42.8
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.4e-126 457.6 320 71.6
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.6e-122 444.1 496 50.8
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.7e-117 426.8 458 50.2
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 6.7e-116 422.2 641 40.4
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.2e-114 417.2 607 43.2
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.5e-111 405.2 319 62.7
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.1e-109 399.1 357 59.1
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.7e-108 395.6 362 60.2
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 2.8e-82 310.5 328 53.0
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 4.8e-82 309.7 640 33.8
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.7e-74 284.6 485 37.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.8e-65 254.6 188 68.1
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 9.2e-65 252.3 218 57.8
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.9e-63 246.9 193 65.8
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 6.6e-63 246.1 166 69.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-53 214.9 135 72.6
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 3.9e-47 193.7 362 39.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.3e-42 178.7 119 70.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.8e-37 161.0 115 67.0
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.6e-37 160.6 115 67.0
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 5.8e-35 153.3 130 59.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.3e-31 141.4 167 51.5
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 8.7e-31 139.4 118 61.9
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 4.8e-29 133.7 80 77.5
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.1e-28 131.0 97 66.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.0e-28 130.6 97 66.0
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 7.6e-27 126.3 80 72.5
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.7e-26 125.2 201 41.8
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 8.7e-23 112.8 87 60.9
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 8.1e-21 106.3 107 57.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 8.1e-21 106.3 132 53.0
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.4e-20 105.5 122 53.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.8e-15 88.6 65 63.1
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 6.2e-13 80.1 82 53.7
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.0e-10 72.8 56 58.9
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 6.5e-10 70.1 41 78.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 4.6e-08 63.9 34 88.2
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.1e-06 59.3 35 77.1


User provided reference genes

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