Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.6e-308 1060.8 566 100.0
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.3e-168 595.9 570 59.3
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 4.2e-131 472.6 574 51.9
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 9.6e-128 461.5 522 55.6
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.9e-112 410.6 572 52.1
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.5e-108 395.6 622 46.0
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 6.1e-82 309.3 761 35.1
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.4e-78 298.1 597 41.0
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 8.3e-71 272.3 573 41.0
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 3.1e-70 270.4 597 42.0
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 3.6e-66 256.9 614 38.8
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 2.6e-64 250.8 585 38.6
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 8.6e-60 235.7 561 37.1
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 3.6e-58 230.3 621 36.2
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.3e-55 221.9 480 38.8
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.7e-53 214.2 562 35.8
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.8e-53 212.6 590 36.3
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.7e-52 211.5 602 36.7
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 5.0e-52 209.9 367 39.8
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 4.3e-51 206.8 612 35.5
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.6e-51 206.5 594 34.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 2.1e-50 204.5 548 34.9
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 6.2e-50 203.0 518 35.5
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.4e-49 201.8 329 46.2
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.4e-49 201.8 628 34.9
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 4.0e-49 200.3 421 39.7
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.5e-48 198.4 373 39.1
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 5.8e-48 196.4 607 34.4
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 7.5e-48 196.1 624 33.7
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.7e-47 194.9 317 45.4
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 2.2e-47 194.5 467 40.3
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 3.7e-47 193.7 503 35.8
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 6.4e-47 193.0 409 40.8
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 6.4e-47 193.0 708 30.8
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 8.3e-47 192.6 525 33.9
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 8.3e-47 192.6 334 44.9
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.1e-46 192.2 494 35.2
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 4.1e-46 190.3 568 33.6
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 7.0e-46 189.5 576 34.5
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.2e-45 188.7 413 35.8
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 6.0e-45 186.4 659 34.0
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.0e-45 186.4 578 33.2
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.0e-44 185.7 584 33.0
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.3e-44 185.3 589 34.6
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.3e-44 185.3 567 35.1
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.7e-44 184.9 626 33.7
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.7e-44 184.9 667 32.7
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 3.9e-44 183.7 522 33.0
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 5.0e-44 183.3 457 36.8
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 5.0e-44 183.3 507 35.7
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 6.6e-44 183.0 397 38.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 6.6e-44 183.0 393 37.7
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 8.6e-44 182.6 338 42.9
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-43 182.2 591 33.3
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.5e-43 181.8 426 37.6
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.9e-43 181.4 317 42.0
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.9e-43 181.4 580 33.6
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.5e-43 181.0 602 34.2
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 4.3e-43 180.3 345 42.9
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 7.3e-43 179.5 397 38.5
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 7.3e-43 179.5 397 38.5
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.2e-42 178.7 575 35.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.6e-42 178.3 574 35.4
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.1e-42 177.9 405 37.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.8e-42 177.6 555 34.2
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 8.1e-42 176.0 585 30.4
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 8.1e-42 176.0 611 31.1
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.1e-41 175.6 312 43.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 5.2e-41 173.3 407 35.6
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.5e-40 171.8 414 38.6
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 5.8e-40 169.9 338 39.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 9.9e-40 169.1 626 32.9
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 2.2e-39 167.9 494 33.0
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 2.9e-39 167.5 316 43.7
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 4.9e-39 166.8 756 28.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 7.1e-38 162.9 617 32.7
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 7.1e-38 162.9 621 32.9
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 9.2e-38 162.5 318 39.3
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 9.2e-38 162.5 578 33.2
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.2e-37 162.2 311 42.4
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.6e-37 161.8 578 35.5
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.7e-37 161.0 310 42.3
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 3.5e-37 160.6 319 38.9
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 7.8e-37 159.5 428 34.3
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 6.6e-36 156.4 319 41.4
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 6.6e-36 156.4 319 41.4
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 6.6e-36 156.4 328 37.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 6.6e-36 156.4 341 37.5
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 8.6e-36 156.0 366 37.2
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.5e-35 152.5 579 30.2
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.1e-34 151.4 447 33.6
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 6.2e-34 149.8 329 37.7
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 6.2e-34 149.8 573 31.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 4.0e-33 147.1 575 32.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.2e-33 146.7 580 32.1
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.5e-32 145.2 320 40.0
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 7.6e-32 142.9 576 31.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.7e-31 141.7 557 33.4
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.9e-31 141.0 553 31.3
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 4.9e-31 140.2 303 39.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 6.4e-31 139.8 589 30.2
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 1.1e-30 139.0 508 33.3
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.4e-30 138.7 550 31.1
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.9e-30 138.3 424 33.7
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 9.2e-30 136.0 446 33.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-28 132.1 427 30.9
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 4.3e-27 127.1 444 29.3
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 5.6e-27 126.7 485 30.7
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 7.3e-27 126.3 555 29.9
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 9.6e-27 125.9 601 29.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 4.7e-26 123.6 346 34.1
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 8.1e-26 122.9 375 30.1
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.6e-24 117.9 583 30.0
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 2.6e-24 117.9 445 31.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.9e-22 111.7 141 48.2
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 7.8e-21 106.3 172 40.7
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.3e-20 104.8 463 30.9
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.1e-19 102.4 307 29.6
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.1e-17 94.4 293 28.0
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 4.0e-17 94.0 224 33.9
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 9.0e-17 92.8 396 30.3
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 4.9e-15 87.0 205 41.5
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 3.2e-14 84.3 188 38.3
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.2e-13 82.4 254 35.4
unitig_0.g2822 Utricularia gibba HOM05D005642 ORTHO05D006672 1.2e-13 82.4 167 42.5
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.6e-13 82.0 306 29.4
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.6e-13 82.0 204 34.3
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 5.1e-12 77.0 204 36.3
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 1.6e-10 72.0 238 30.7
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 3.7e-10 70.9 150 42.0
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 3.7e-10 70.9 181 34.3
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 6.2e-10 70.1 322 29.2
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 1.8e-09 68.6 245 29.4
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 5.3e-09 67.0 332 26.2
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 5.3e-09 67.0 260 28.8
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 6.9e-09 66.6 94 41.5
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 6.9e-09 66.6 240 28.3
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.2e-08 65.9 245 28.2
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.0e-08 65.1 493 26.2
vmacro20571 Vaccinium macrocarpon HOM05D006756 ORTHO05D001869 2.0e-08 65.1 237 30.0
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 3.4e-08 64.3 259 27.4
Sc18g0000500 Simmondsia chinensis HOM05D006756 ORTHO05D001869 4.5e-08 63.9 257 30.0
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 5.8e-08 63.5 323 25.7
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 9.9e-08 62.8 261 27.6
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 2.2e-07 61.6 262 27.9
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 2.2e-07 61.6 258 28.7
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 4.9e-07 60.5 320 26.2
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 4.9e-07 60.5 375 23.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 6.4e-07 60.1 588 24.5
Atru.chr7.1133 Acer truncatum HOM05D006756 ORTHO05D001869 1.4e-06 58.9 267 29.6
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.4e-06 58.9 249 26.9
Glyma.04G146900 Glycine max HOM05D006756 ORTHO05D001869 2.4e-06 58.2 310 25.8
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 2.4e-06 58.2 259 27.4
Rhsim01G0068000 Rhododendron simsii HOM05D006756 ORTHO05D001869 2.4e-06 58.2 270 27.4
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 2.4e-06 58.2 316 29.7
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 3.2e-06 57.8 325 24.6
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 3.2e-06 57.8 331 26.6
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 4.2e-06 57.4 321 26.5
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 5.5e-06 57.0 253 29.2
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 5.5e-06 57.0 69 49.3
Hund09258 Selenicereus undatus HOM05D006756 ORTHO05D001869 5.5e-06 57.0 255 30.6
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 5.5e-06 57.0 245 31.8
BcaC03g13743 Brassica carinata HOM05D006756 ORTHO05D001869 7.1e-06 56.6 275 26.9
BcaC04g19408 Brassica carinata HOM05D006756 ORTHO05D001869 7.1e-06 56.6 296 27.0
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 9.3e-06 56.2 348 25.0
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 9.3e-06 56.2 245 31.8


User provided reference genes

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