Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.8e-99 365.9 183 100.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 3.0e-91 338.6 183 89.1
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 3.0e-91 338.6 183 89.1
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.5e-90 336.3 183 89.6
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 88.5
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 88.5
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 88.5
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 88.5
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 87.4
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.9
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 88.0
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 83.1
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 81.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 81.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 81.4
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.0
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 80.9
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 3.6e-84 315.1 182 81.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 81.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 82.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 79.2
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.8e-83 312.8 182 81.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 80.9
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 79.8
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 79.8
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.3
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.3
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 80.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 81.4
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 80.3
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 79.8
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 80.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 78.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 78.7
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 78.7
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.4e-82 308.5 182 80.2
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 78.7
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 181 80.7
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.8
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 80.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.2
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.8
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 79.0
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 79.8
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 78.7
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 79.8
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 78.7
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 79.8
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 78.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 78.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 8.3e-81 303.9 182 78.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.1e-80 303.5 181 80.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 78.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 78.1
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 77.6
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 78.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 79.0
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 77.6
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 76.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.2e-79 300.1 155 93.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 79.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 77.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 7.8e-79 297.4 182 76.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 76.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 77.3
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 77.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 77.3
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.7e-78 296.2 190 75.3
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 78.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 76.5
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 77.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.9e-77 292.7 181 77.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.9e-77 292.7 183 74.9
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.9e-77 292.7 183 76.5
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 77.3
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 76.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 9.5e-77 290.4 184 75.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 74.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.0e-76 287.3 183 74.3
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.8e-75 286.2 183 73.2
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.8e-75 286.2 184 74.5
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.0e-75 285.4 184 75.0
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.6e-74 282.3 184 72.3
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 5.8e-74 281.2 183 71.6
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 9.8e-74 280.4 183 71.6
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.2e-73 279.3 182 73.6
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.4e-72 276.6 183 72.1
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.4e-72 275.8 184 71.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.1e-72 275.0 183 71.0
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.2e-71 273.5 228 61.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.0e-71 272.7 183 67.2
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.3e-70 270.0 185 70.8
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 5.0e-70 268.1 183 67.2
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-69 266.9 152 84.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-69 266.9 184 67.9
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.5e-69 265.8 183 72.7
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.2e-68 263.5 182 66.5
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.2e-68 263.5 152 78.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.0e-67 258.5 219 60.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.6e-66 255.8 155 78.1
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.1e-64 250.4 183 69.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 3.2e-64 248.8 181 64.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.9e-61 239.6 181 66.9
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 6.2e-60 234.6 138 79.7
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 8.1e-60 234.2 188 64.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.2e-58 230.3 181 65.2
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 2.2e-57 226.1 183 62.8
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 5.1e-54 214.9 138 70.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.4e-51 206.8 175 61.7
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.4e-51 206.1 183 59.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.0e-51 205.3 150 66.0
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 6.8e-51 204.5 158 63.3
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.5e-50 203.4 178 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.7e-49 199.9 152 63.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 2.3e-46 189.5 186 50.5
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 9.6e-45 184.1 149 60.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.8e-43 179.9 102 84.3
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.4e-43 179.5 158 58.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.9e-41 172.6 102 78.4
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 6.4e-41 171.4 132 59.8
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 9.3e-40 167.5 106 72.6
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.7e-39 166.0 100 79.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 7.8e-39 164.5 100 76.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-38 163.7 99 76.8
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.5e-37 159.5 134 61.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.9e-35 151.4 105 70.5
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 7.6e-34 147.9 99 68.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.0e-31 138.3 81 79.0
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.3e-28 130.6 81 76.5
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 2.1e-28 129.8 78 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.9e-25 119.4 101 59.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.2e-24 115.9 106 53.8
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 4.0e-19 99.0 68 66.2
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 3.8e-17 92.4 106 49.1
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 8.4e-17 91.3 52 82.7
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.1e-15 86.7 187 35.8
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 7.2e-08 61.6 181 30.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 2.7e-07 59.7 37 67.6
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.6e-07 58.9 81 42.0
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 8.8e-06 54.7 87 34.5


User provided reference genes

Program Settings