Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 0.0e+00 1176.8 604 100.0
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 0.0e+00 1127.5 604 95.7
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 0.0e+00 1124.0 604 95.2
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 0.0e+00 1121.7 604 95.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 0.0e+00 1080.5 604 90.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 7.7e-309 1063.1 604 89.9
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.0e-305 1052.7 604 88.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.0e-305 1051.2 604 88.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.2e-303 1045.0 595 89.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 2.3e-284 981.9 562 89.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.6e-284 979.9 601 83.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 7.3e-283 976.9 598 83.4
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.7e-276 955.7 603 78.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 5.0e-276 954.1 603 80.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 6.6e-276 953.7 604 79.1
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.1e-275 953.0 603 78.9
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.3e-275 951.4 611 78.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.8e-274 948.3 605 78.5
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.6e-274 948.0 603 79.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.3e-273 945.3 622 77.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 6.8e-273 943.7 584 81.3
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.6e-272 941.8 595 79.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 7.5e-272 940.3 594 79.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.7e-271 939.1 627 76.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 6.4e-271 937.2 606 78.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 9.2e-270 933.3 603 77.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.6e-269 932.6 606 77.9
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.8e-269 930.2 603 77.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.7e-268 929.1 603 77.8
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.0e-268 928.3 603 76.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 6.6e-268 927.2 595 77.8
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 9.5e-267 923.3 601 77.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.8e-266 921.8 604 77.2
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.6e-266 921.4 604 76.8
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.5e-264 916.0 604 76.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.5e-264 916.0 603 77.4
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.9e-264 913.3 570 79.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.7e-263 912.5 603 76.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.9e-263 911.8 603 75.8
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.7e-263 911.4 603 77.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 8.3e-263 910.2 604 76.2
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.1e-262 909.8 603 76.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.9e-262 909.1 616 74.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.9e-262 909.1 603 74.8
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.2e-261 906.4 604 74.8
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.6e-261 904.4 602 75.9
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.0e-261 904.0 604 75.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.3e-260 902.9 601 75.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-260 902.9 606 75.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-259 899.4 651 71.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.9e-259 899.0 603 74.1
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-259 899.0 606 75.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 607 75.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.3e-259 898.3 606 75.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 3.3e-259 898.3 606 75.4
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.3e-259 897.9 604 75.2
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.5e-259 896.7 604 74.3
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.6e-258 896.0 606 75.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 3.6e-258 894.8 601 74.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 4.7e-258 894.4 599 74.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 8.1e-258 893.6 598 75.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 8.1e-258 893.6 598 75.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-257 893.3 607 74.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.8e-257 892.5 597 74.0
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.8e-257 892.5 601 74.2
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.4e-257 892.1 598 75.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 6.8e-257 890.6 607 74.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.9e-257 890.2 592 75.3
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.2e-256 889.8 593 74.9
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-256 889.4 603 73.5
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-256 889.4 603 73.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.0e-256 889.0 604 74.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.4e-256 888.3 598 75.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 4.4e-256 887.9 603 73.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.9e-256 886.7 619 73.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.7e-255 885.9 598 74.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.7e-255 885.9 592 75.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.2e-255 885.6 603 73.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.2e-255 885.6 603 73.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.2e-255 885.6 603 73.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.9e-254 882.5 603 74.0
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.9e-254 882.5 603 74.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.6e-253 879.4 602 73.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.1e-253 879.0 604 74.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 7.8e-253 877.1 601 74.9
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.0e-252 876.7 604 74.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.9e-251 872.5 609 73.6
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 4.3e-251 871.3 598 73.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-251 871.3 684 67.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.4e-249 865.5 560 78.2
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.4e-249 865.5 660 68.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.4e-249 865.5 622 71.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.7e-247 859.4 603 70.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.9e-247 858.6 596 73.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.8e-247 858.2 603 73.6
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-246 856.7 624 70.2
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 6.0e-245 850.9 605 71.2
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.5e-243 846.3 605 70.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.1e-241 840.1 554 75.6
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-238 828.6 566 74.9
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.1e-237 825.9 600 71.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.7e-237 825.5 592 72.1
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.0e-236 823.5 550 74.9
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.3e-235 818.1 592 71.5
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.1e-234 815.8 605 70.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.1e-230 800.8 613 68.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 6.5e-223 777.7 605 67.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 6.0e-221 771.2 645 63.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.9e-217 757.7 471 79.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 9.0e-217 757.3 478 79.5
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.6e-216 755.7 658 60.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.4e-216 755.4 604 64.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.2e-214 748.4 601 62.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 3.9e-212 741.9 499 75.6
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.7e-212 741.1 496 74.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.7e-210 736.5 602 63.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.4e-200 702.2 551 67.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-192 676.4 427 77.5
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-182 644.0 443 74.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.8e-178 628.6 496 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-169 600.5 584 52.7
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 8.6e-167 591.3 596 51.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.3e-166 589.3 575 52.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.1e-153 545.8 441 63.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.1e-149 533.5 336 80.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.5e-142 510.0 369 70.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.1e-136 490.3 418 60.3
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 3.0e-135 486.5 603 45.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 8.7e-135 485.0 573 45.5
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.9e-129 467.2 288 81.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-127 459.5 532 50.6
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-118 431.4 337 67.1
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.1e-112 410.6 248 80.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.6e-110 401.7 439 51.0
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 8.2e-109 398.7 279 72.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.6e-91 340.5 318 56.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-86 324.3 276 60.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 7.0e-76 289.3 671 32.5
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.4e-73 278.9 566 35.7
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.8e-69 267.3 181 74.6
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 5.5e-65 253.1 153 79.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-58 230.7 155 74.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.6e-56 223.8 154 74.0
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.9e-45 187.6 102 88.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.4e-45 186.4 107 85.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 7.0e-44 183.0 630 27.1
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.8e-31 141.7 96 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.9e-31 139.4 120 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.7e-27 127.9 187 39.6
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 5.1e-26 123.6 100 64.0
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.1e-24 118.2 100 60.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.4e-21 106.7 66 74.2
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.2e-20 104.4 641 24.0
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.6e-19 102.1 75 68.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.0e-18 97.8 79 57.0
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 2.5e-17 94.7 72 59.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.1e-15 89.4 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 5.3e-15 87.0 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.3e-13 82.4 72 51.4
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.4e-12 77.0 53 75.5
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 7.1e-12 76.6 61 67.2
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-11 75.5 99 46.5
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-11 75.5 53 73.6
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.5e-11 74.3 194 28.9
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.8e-07 62.0 54 59.3


User provided reference genes

Program Settings