Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 4.2e-102 374.8 203 100.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.6e-83 312.4 201 85.1
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 3.5e-80 302.0 202 83.2
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 2.3e-71 272.7 202 75.2
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.5e-62 243.4 205 71.7
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 3.6e-61 238.8 204 69.6
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 3.6e-61 238.8 204 68.1
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 4.7e-61 238.4 204 67.6
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 4.7e-61 238.4 204 67.6
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.1e-60 237.3 202 71.8
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.1e-60 237.3 204 67.2
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.1e-60 237.3 204 67.6
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.4e-60 236.9 203 71.4
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.8e-60 236.5 204 68.1
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.4e-60 236.1 206 69.9
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 5.2e-60 235.0 204 70.1
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 4.4e-59 231.9 204 66.7
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 4.4e-59 231.9 204 66.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.3e-58 230.3 204 70.6
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.2e-58 229.6 204 66.7
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.2e-58 229.6 204 64.7
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.9e-58 229.2 202 68.8
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.8e-58 228.8 204 65.2
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.8e-58 228.8 206 69.4
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.8e-58 228.8 205 65.9
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.9e-58 228.4 205 64.9
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 4.9e-58 228.4 202 65.8
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.9e-58 228.4 205 66.3
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 6.4e-58 228.0 204 66.2
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 8.4e-58 227.6 201 68.7
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 8.4e-58 227.6 206 66.5
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.4e-57 226.9 209 67.9
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.9e-57 226.5 204 66.7
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 9.3e-57 224.2 200 69.0
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.6e-56 223.4 208 64.4
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.1e-56 223.0 203 67.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 2.1e-56 223.0 209 68.9
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 2.1e-56 223.0 201 66.7
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 3.5e-56 222.2 212 64.2
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 4.6e-56 221.9 212 67.0
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 4.6e-56 221.9 204 65.7
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 6.0e-56 221.5 203 68.0
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 7.8e-56 221.1 201 65.2
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.0e-55 220.7 197 68.0
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.3e-55 220.3 209 67.5
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.9e-55 218.8 208 69.2
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 5.1e-55 218.4 203 66.0
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.1e-55 218.4 201 68.7
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 5.1e-55 218.4 202 65.8
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 8.7e-55 217.6 201 68.7
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.5e-54 216.9 205 66.8
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 1.5e-54 216.9 208 65.4
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.9e-54 216.5 210 65.7
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 3.3e-54 215.7 201 65.7
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 3.3e-54 215.7 203 66.5
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 4.3e-54 215.3 203 68.5
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 4.3e-54 215.3 208 63.0
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 7.3e-54 214.5 202 67.3
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 9.6e-54 214.2 201 64.7
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.6e-53 213.4 207 63.3
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 2.1e-53 213.0 211 63.0
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 2.1e-53 213.0 211 60.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.1e-53 213.0 205 65.9
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.8e-53 212.6 201 66.2
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 3.6e-53 212.2 211 60.2
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.8e-53 211.8 208 62.0
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.4e-52 210.3 205 64.4
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.8e-52 209.9 207 62.3
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 2.4e-52 209.5 204 65.7
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 1.2e-51 207.2 206 64.1
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.0e-51 206.5 210 60.0
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 4.4e-51 205.3 200 62.5
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 9.9e-51 204.1 205 62.9
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.3e-50 203.8 202 65.8
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.2e-50 203.0 201 62.7
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 4.9e-50 201.8 202 62.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-49 200.7 208 58.2
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.1e-49 200.7 208 58.2
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.4e-49 200.3 203 61.6
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 3.2e-49 199.1 205 64.4
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 7.1e-49 198.0 202 57.4
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 7.1e-49 198.0 206 57.8
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 2.1e-48 196.4 210 57.6
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 2.1e-48 196.4 210 57.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.1e-48 196.4 185 61.1
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 2.1e-48 196.4 205 60.5
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.7e-48 196.1 205 62.0
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.5e-48 195.7 209 58.9
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-48 195.7 205 62.4
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 6.0e-48 194.9 209 58.9
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 6.0e-48 194.9 209 58.9
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 6.0e-48 194.9 209 58.9
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 6.0e-48 194.9 201 61.2
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 7.9e-48 194.5 206 61.7
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.9e-48 194.5 206 61.7
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.0e-47 194.1 205 61.5
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.0e-47 194.1 205 61.5
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-47 193.7 212 55.7
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.3e-47 193.7 208 63.0
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-47 193.4 209 58.4
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 2.3e-47 193.0 203 60.6
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.9e-47 192.2 194 60.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.9e-47 192.2 205 61.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 6.6e-47 191.4 201 57.2
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 8.7e-47 191.0 193 57.0
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.1e-46 190.7 204 60.8
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.9e-46 189.9 209 59.8
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.6e-46 188.3 208 56.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 5.6e-46 188.3 173 65.3
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-45 186.4 212 58.5
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 2.1e-45 186.4 151 76.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.8e-45 186.0 208 59.1
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.8e-44 183.3 203 57.1
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.4e-44 183.0 198 58.1
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.3e-44 181.8 204 57.4
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 9.0e-44 181.0 207 55.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.0e-43 179.9 205 54.6
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 3.4e-43 179.1 206 56.3
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 3.4e-43 179.1 196 57.7
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 3.4e-43 179.1 203 56.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.5e-43 178.7 206 56.3
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.6e-43 177.9 203 57.1
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-42 177.2 206 55.8
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.3e-42 177.2 206 55.8
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.3e-42 177.2 200 56.5
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.3e-42 177.2 200 56.0
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 4.9e-42 175.3 157 65.6
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 8.4e-42 174.5 203 52.7
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.4e-41 173.7 204 54.4
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 4.6e-40 168.7 206 55.3
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 3.3e-38 162.5 201 50.2
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 7.4e-38 161.4 172 57.0
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.3e-37 160.6 203 51.2
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 3.7e-37 159.1 203 50.2
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.1e-36 156.0 195 50.8
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.2e-35 154.1 181 60.8
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 2.9e-34 149.4 176 51.1
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 6.5e-34 148.3 202 47.5
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 7.1e-33 144.8 173 54.3
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 7.9e-32 141.4 115 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.8e-29 132.1 175 45.1
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.1e-28 129.4 156 50.0
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.2e-27 127.5 167 44.3
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 7.6e-27 124.8 156 47.4
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.3e-26 124.0 149 49.0
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 5.0e-26 122.1 145 50.3
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.3e-23 113.2 122 59.0
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.5e-19 100.5 137 48.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 5.9e-19 98.6 135 46.7
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.9e-17 93.6 144 43.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.2e-17 92.4 136 47.1
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 4.2e-17 92.4 131 50.4
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-16 90.9 62 74.2
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.1e-16 90.1 135 46.7
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.0e-15 87.8 163 41.1
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 1.0e-15 87.8 76 67.1
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.1e-15 85.5 132 45.5
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 3.1e-12 76.3 115 40.9
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.0e-10 71.2 89 52.8
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 2.7e-08 63.2 142 32.4


User provided reference genes

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