Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g045010 Medicago truncatula HOM05D000611 ORTHO05D000809 3.5e-46 188.0 97 100.0
Ca_25690_v3 Cicer arietinum L. HOM05D000611 ORTHO05D000809 1.3e-16 89.7 54 79.6
TPR.G29870 Trifolium pratense HOM05D000611 ORTHO05D000809 1.1e-15 86.7 54 81.5
Psat1g094760 Pisum sativum HOM05D000611 ORTHO05D000809 2.5e-15 85.5 54 75.9
Glyma.05G090000 Glycine max HOM05D000611 ORTHO05D000809 9.3e-15 83.6 75 58.7
TPR.G14384 Trifolium pratense HOM05D000611 ORTHO05D000809 1.2e-14 83.2 55 81.8
VMungo0464G0567 Vigna mungo HOM05D000611 ORTHO05D000809 6.0e-14 80.9 75 57.3
Phvul.004G051700 Phaseolus vulgaris HOM05D000611 ORTHO05D000809 3.9e-13 78.2 73 56.2
Medtr6g028020 Medicago truncatula HOM05D000611 ORTHO05D000809 5.1e-13 77.8 80 52.5
Lj2g0026825 Lotus japonicus HOM05D000611 ORTHO05D000809 1.5e-12 76.3 75 56.0
Potri.013G061500 Populus trichocarpa HOM05D000611 ORTHO05D000809 1.5e-12 76.3 53 73.6
Sabra13G0054400 Salix brachista HOM05D000611 ORTHO05D000809 3.3e-12 75.1 53 71.7
Prupe.3G134100 Prunus persica HOM05D000611 ORTHO05D000809 4.3e-12 74.7 54 70.4
Lalb_Chr21g0317261 Lupinus albus HOM05D000611 ORTHO05D000809 5.7e-12 74.3 54 68.5
Prupe.3G133800 Prunus persica HOM05D000611 ORTHO05D000809 5.7e-12 74.3 71 56.3
Lalb_Chr02g0157271 Lupinus albus HOM05D000611 ORTHO05D000809 7.4e-12 73.9 75 53.3
Potri.019G037900 Populus trichocarpa HOM05D000611 ORTHO05D000809 7.4e-12 73.9 53 69.8
MD17G1235600 Malus domestica HOM05D000611 ORTHO05D000809 1.6e-11 72.8 75 50.7
QL01p018552 Quercus lobata HOM05D000611 ORTHO05D000809 1.6e-11 72.8 75 49.3
MD09G1243600 Malus domestica HOM05D000611 ORTHO05D000809 2.2e-11 72.4 75 50.7
Haze_20458 Corylus avellana HOM05D000611 ORTHO05D000809 2.8e-11 72.0 73 53.4
Thecc.05G244900 Theobroma cacao HOM05D000611 ORTHO05D000809 2.8e-11 72.0 54 64.8
arahy.Tifrunner.gnm1.ann1.DX8RYA Arachis hypogaea HOM05D000611 ORTHO05D000809 3.7e-11 71.6 52 65.4
arahy.Tifrunner.gnm1.ann1.70YL0N Arachis hypogaea HOM05D000611 ORTHO05D000809 4.8e-11 71.2 54 63.0
Ciclev10020214m.g Citrus clementina HOM05D000611 ORTHO05D000809 6.3e-11 70.9 52 65.4
TWI34G2036 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 8.2e-11 70.5 53 62.3
Sabra19G0049100 Salix brachista HOM05D000611 ORTHO05D000809 1.1e-10 70.1 54 64.8
Sc07g0005050 Simmondsia chinensis HOM05D000611 ORTHO05D000809 1.1e-10 70.1 56 66.1
Cfa008667 Carpinus fangiana HOM05D000611 ORTHO05D000809 1.4e-10 69.7 54 68.5
Eucgr.K01507 Eucalyptus grandis HOM05D000611 ORTHO05D000809 1.4e-10 69.7 74 50.0
CiPaw.09G165000 Carya illinoinensis HOM05D000611 ORTHO05D000809 1.8e-10 69.3 47 72.3
COL.COLO4_28606 Corchorus olitorius HOM05D000611 ORTHO05D000809 1.8e-10 69.3 54 64.8
QL07p018587 Quercus lobata HOM05D000611 ORTHO05D000809 2.4e-10 68.9 77 44.2
EL10Ac5g11756 Beta vulgaris HOM05D000611 ORTHO05D000809 4.1e-10 68.2 54 63.0
FAN05G0188 Fragaria x ananassa HOM05D000611 ORTHO05D000809 4.1e-10 68.2 75 50.7
Manes.09G138400 Manihot esculenta HOM05D000611 ORTHO05D000809 6.9e-10 67.4 53 60.4
FvH4_6g26590 Fragaria vesca HOM05D000611 ORTHO05D000809 9.0e-10 67.0 75 50.7
FAN14G4558 Fragaria x ananassa HOM05D000611 ORTHO05D000809 9.0e-10 67.0 75 50.7
Lsat_1_v5_gn_1_56161 Lactuca sativa HOM05D000611 ORTHO05D000809 9.0e-10 67.0 52 59.6
Sp5g00720 Schrenkiella parvula HOM05D000611 ORTHO05D000809 9.0e-10 67.0 70 50.0
CAN.G245.2 Capsicum annuum HOM05D000611 ORTHO05D000809 1.2e-09 66.6 78 46.2
Haze_23631 Corylus avellana HOM05D000611 ORTHO05D000809 1.2e-09 66.6 75 46.7
GSVIVG01029969001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.2e-09 66.6 54 61.1
AUR62039714 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.5e-09 66.2 54 63.0
Gohir.A13G097600 Gossypium hirsutum HOM05D000611 ORTHO05D000809 1.5e-09 66.2 54 63.0
SHI14934 Sapria himalayana HOM05D000611 ORTHO05D000809 1.5e-09 66.2 75 41.3
Duzib128G1685 Durio zibethinus HOM05D000611 ORTHO05D000809 2.0e-09 65.9 47 68.1
Nitab4.5_0000098g0090 Nicotiana tabacum HOM05D000611 ORTHO05D000809 2.0e-09 65.9 76 47.4
Nitab4.5_0001606g0050 Nicotiana tabacum HOM05D000611 ORTHO05D000809 2.0e-09 65.9 76 47.4
Potri.019G038184 Populus trichocarpa HOM05D000611 ORTHO05D000809 2.0e-09 65.9 47 68.1
Gohir.D13G102300 Gossypium hirsutum HOM05D000611 ORTHO05D000809 3.4e-09 65.1 54 61.1
Gorai.013G114500 Gossypium raimondii HOM05D000611 ORTHO05D000809 3.4e-09 65.1 54 61.1
Potri.019G038226 Populus trichocarpa HOM05D000611 ORTHO05D000809 4.5e-09 64.7 47 68.1
THA.LOC104823780 Tarenaya hassleriana HOM05D000611 ORTHO05D000809 4.5e-09 64.7 74 48.6
AL5G45580 Arabidopsis lyrata HOM05D000611 ORTHO05D000809 5.9e-09 64.3 70 47.1
Cfa010236 Carpinus fangiana HOM05D000611 ORTHO05D000809 5.9e-09 64.3 74 43.2
PGR142G2002 Punica granatum HOM05D000611 ORTHO05D000809 5.9e-09 64.3 76 48.7
QL11p056147 Quercus lobata HOM05D002274 ORTHO05D000809 5.9e-09 64.3 73 47.9
Dinv25107 Davidia involucrata HOM05D000611 ORTHO05D000809 7.6e-09 63.9 54 59.3
Cpa.g.sc161.9 Carica papaya HOM05D000611 ORTHO05D000809 1.3e-08 63.2 53 56.6
CDE10G0073 Ceratophyllum demersum HOM05D000611 ORTHO05D000809 1.3e-08 63.2 54 57.4
RcHm_v2.0_Chr2g0127561 Rosa chinensis HOM05D000611 ORTHO05D000809 1.3e-08 63.2 75 49.3
TAR633G1322 Trochodendron aralioides HOM05D000611 ORTHO05D000809 1.3e-08 63.2 75 45.3
Atru.chr3.3016 Acer truncatum HOM05D000611 ORTHO05D000809 1.7e-08 62.8 50 62.0
CARHR173070 Cardamine hirsuta HOM05D000611 ORTHO05D000809 1.7e-08 62.8 71 47.9
Peaxi162Scf00061g03010 Petunia axillaris HOM05D000611 ORTHO05D000809 1.7e-08 62.8 72 45.8
Rhsim03G0053100 Rhododendron simsii HOM05D000611 ORTHO05D000809 1.7e-08 62.8 77 46.8
HanXRQChr11g0348881 Helianthus annuus HOM05D000611 ORTHO05D000809 2.2e-08 62.4 50 60.0
Nn6g32381 Nelumbo nucifera HOM05D000611 ORTHO05D000809 2.2e-08 62.4 53 56.6
AT3G62800 Arabidopsis thaliana HOM05D000611 ORTHO05D000809 2.9e-08 62.0 70 45.7
A09p54650 Brassica napus HOM05D000611 ORTHO05D000809 2.9e-08 62.0 72 44.4
BraA09t40876Z Brassica rapa HOM05D000611 ORTHO05D000809 2.9e-08 62.0 72 44.4
Dinv05571 Davidia involucrata HOM05D000611 ORTHO05D000809 2.9e-08 62.0 54 59.3
FAN11G0993 Fragaria x ananassa HOM05D000611 ORTHO05D000809 2.9e-08 62.0 75 48.0
Lj1C1056G10 Lonicera japonica HOM05D000611 ORTHO05D000809 2.9e-08 62.0 69 52.2
Lj2C893G4 Lonicera japonica HOM05D000611 ORTHO05D000809 2.9e-08 62.0 72 47.2
Solyc01g056620.4 Solanum lycopersicum HOM05D000611 ORTHO05D000809 2.9e-08 62.0 72 45.8
Sopen01g020540 Solanum pennellii HOM05D000611 ORTHO05D000809 2.9e-08 62.0 72 45.8
FvH4_1g25060 Fragaria vesca HOM05D000611 ORTHO05D000809 3.8e-08 61.6 75 48.0
MD11G1178800 Malus domestica HOM05D000611 ORTHO05D000809 3.8e-08 61.6 56 55.4
BcaC07g42732 Brassica carinata HOM05D000611 ORTHO05D000809 5.0e-08 61.2 71 45.1
C08p37550 Brassica napus HOM05D000611 ORTHO05D000809 5.0e-08 61.2 72 44.4
FAN09G1078 Fragaria x ananassa HOM05D000611 ORTHO05D000809 5.0e-08 61.2 75 46.7
Ah.02g115200 Amaranthus hybridus HOM05D000611 ORTHO05D000809 6.5e-08 60.8 75 46.7
BcaC07g40761 Brassica carinata HOM05D000611 ORTHO05D000809 6.5e-08 60.8 72 44.4
BolC8t51335H Brassica oleracea HOM05D000611 ORTHO05D000809 6.5e-08 60.8 72 44.4
Carub.0005s2946 Capsella rubella HOM05D000611 ORTHO05D000809 6.5e-08 60.8 70 45.7
FAN23G0451 Fragaria x ananassa HOM05D000611 ORTHO05D000809 6.5e-08 60.8 75 48.0
vmacro12778 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 8.5e-08 60.5 93 40.9
Aqoxy3G00859 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 1.1e-07 60.1 56 53.6
Dinv32137 Davidia involucrata HOM05D000611 ORTHO05D000809 1.1e-07 60.1 87 41.4
Lj1A1057G22 Lonicera japonica HOM05D000611 ORTHO05D000809 1.1e-07 60.1 53 58.5
MBI11_g45238_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 1.1e-07 60.1 53 56.6
Sed0023110 Sechium edule HOM05D000611 ORTHO05D000809 1.1e-07 60.1 50 60.0
CANSAT25G3146 Cannabis sativa HOM05D000611 ORTHO05D000809 1.4e-07 59.7 53 54.7
Thhalv10006095m.g Eutrema salsugineum HOM05D000611 ORTHO05D000809 1.4e-07 59.7 69 47.8
Prupe.6G151600 Prunus persica HOM05D000611 ORTHO05D000809 1.4e-07 59.7 53 56.6
ATR0697G034 Amborella trichopoda HOM05D000611 ORTHO05D000809 1.9e-07 59.3 74 43.2
TWI79G1772 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 1.9e-07 59.3 54 53.7
Cc06_g07300 Coffea canephora HOM05D000611 ORTHO05D000809 2.5e-07 58.9 95 37.9
Hund10768 Selenicereus undatus HOM05D000611 ORTHO05D000809 2.5e-07 58.9 53 54.7
DCAR_009081 Daucus carota HOM05D000611 ORTHO05D000809 3.2e-07 58.5 47 63.8
COL.COLO4_25321 Corchorus olitorius HOM05D000611 ORTHO05D000809 4.2e-07 58.2 68 44.1
Os09g0508500 Oryza sativa ssp. japonica HOM05D000611 ORTHO05D000809 4.2e-07 58.2 52 53.8
Thecc.09G265700 Theobroma cacao HOM05D000611 ORTHO05D000809 4.2e-07 58.2 53 52.8
Hma1.2p1_1288F.1_g273320 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 5.5e-07 57.8 75 41.3
Aa31LG9G18060 Aethionema arabicum HOM05D000611 ORTHO05D000809 7.2e-07 57.4 65 46.2
ClCG10G013620 Citrullus lanatus HOM05D000611 ORTHO05D000809 7.2e-07 57.4 54 51.9
CsaV3_3G043040 Cucumis sativus L. HOM05D000611 ORTHO05D000809 7.2e-07 57.4 47 57.4
FAN21G3967 Fragaria x ananassa HOM05D000611 ORTHO05D000809 7.2e-07 57.4 71 46.5
Gohir.D07G118900 Gossypium hirsutum HOM05D000611 ORTHO05D000809 7.2e-07 57.4 56 51.8
Gorai.001G127900 Gossypium raimondii HOM05D000611 ORTHO05D000809 7.2e-07 57.4 56 51.8
Cc00_g06240 Coffea canephora HOM05D000611 ORTHO05D000809 9.3e-07 57.0 54 59.3
Atru.chr2.1464 Acer truncatum HOM05D000611 ORTHO05D000809 1.2e-06 56.6 37 73.0
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.2e-06 56.6 54 53.7
Ciclev10018273m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.2e-06 56.6 55 50.9
PSO478G1148 Papaver somniferum HOM05D000611 ORTHO05D000809 1.2e-06 56.6 69 42.0
RcHm_v2.0_Chr5g0049631 Rosa chinensis HOM05D000611 ORTHO05D000809 1.2e-06 56.6 53 52.8
Actinidia03940 Actinidia chinensis HOM05D000611 ORTHO05D000809 1.6e-06 56.2 54 53.7
Actinidia07138 Actinidia chinensis HOM05D000611 ORTHO05D000809 1.6e-06 56.2 52 53.8
Duzib168G2209 Durio zibethinus HOM05D000611 ORTHO05D000809 1.6e-06 56.2 56 51.8
Hma1.2p1_0768F.1_g215620 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 1.6e-06 56.2 54 55.6
MBI10_g30301_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 1.6e-06 56.2 52 51.9
MELO3C026605.2 Cucumis melo HOM05D000611 ORTHO05D000809 2.1e-06 55.8 47 55.3
MBI11_g29308_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 2.1e-06 55.8 69 42.0
Oeu032079.1 Olea europaea HOM05D000700 ORTHO05D000397 2.1e-06 55.8 54 57.4
SGA_v2.0_scaffold13G06361 Striga asiatica HOM05D000611 ORTHO05D000809 2.1e-06 55.8 47 59.6
Actinidia36231 Actinidia chinensis HOM05D000611 ORTHO05D000809 2.7e-06 55.5 52 53.8
CSS0001405 Camellia sinensis var. sinensis HOM05D000611 ORTHO05D000809 2.7e-06 55.5 57 50.9
ECA248G2576 Erigeron canadensis HOM05D000611 ORTHO05D000809 2.7e-06 55.5 52 48.1
Migut.J00764 Erythranthe guttata HOM05D000611 ORTHO05D000809 2.7e-06 55.5 47 57.4
Nn4g25992 Nelumbo nucifera HOM05D000611 ORTHO05D000809 2.7e-06 55.5 73 41.1
Actinidia24104 Actinidia chinensis HOM05D000611 ORTHO05D000809 3.6e-06 55.1 52 51.9
Ah.01g002980 Amaranthus hybridus HOM05D000611 ORTHO05D000809 3.6e-06 55.1 52 50.0
Aqoxy2G03111 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 3.6e-06 55.1 69 42.0
Aqoxy3G01690 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 3.6e-06 55.1 69 40.6
AUR62024963 Chenopodium quinoa HOM05D000611 ORTHO05D000809 3.6e-06 55.1 52 50.0
AUR62042191 Chenopodium quinoa HOM05D000611 ORTHO05D000809 3.6e-06 55.1 52 50.0
DCAR_017284 Daucus carota HOM05D000611 ORTHO05D000809 3.6e-06 55.1 65 46.2
PSO063G6960 Papaver somniferum HOM05D000611 ORTHO05D000809 3.6e-06 55.1 55 49.1
Rhsim01G0216200 Rhododendron simsii HOM05D000611 ORTHO05D000809 3.6e-06 55.1 52 51.9
SGA_v2.0_scaffold16G07557 Striga asiatica HOM05D000611 ORTHO05D000809 3.6e-06 55.1 54 51.9
vmacro07555 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 3.6e-06 55.1 93 37.6
Actinidia03726 Actinidia chinensis HOM05D000611 ORTHO05D000809 4.6e-06 54.7 52 51.9
Actinidia33831 Actinidia chinensis HOM05D000611 ORTHO05D000809 4.6e-06 54.7 69 42.0
Actinidia37799 Actinidia chinensis HOM05D000611 ORTHO05D000809 4.6e-06 54.7 75 41.3
CiPaw.04G003100 Carya illinoinensis HOM05D000611 ORTHO05D000809 4.6e-06 54.7 67 46.3
FvH4_3g27052 Fragaria vesca HOM05D000611 ORTHO05D000809 4.6e-06 54.7 53 49.1
FAN11G3944 Fragaria x ananassa HOM05D000611 ORTHO05D000809 4.6e-06 54.7 53 49.1
FAN25G3834 Fragaria x ananassa HOM05D000611 ORTHO05D000809 4.6e-06 54.7 53 49.1
Hma1.2p1_0525F.1_g172650 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 4.6e-06 54.7 67 43.3
Mapoly0369s0002 Marchantia polymorpha HOM05D000611 ORTHO05D000809 4.6e-06 54.7 52 50.0
PSO017G2164 Papaver somniferum HOM05D000611 ORTHO05D000809 4.6e-06 54.7 69 42.0
GSVIVG01021904001 Vitis vinifera HOM05D000611 ORTHO05D000809 4.6e-06 54.7 67 43.3
arahy.Tifrunner.gnm1.ann1.P9I06G Arachis hypogaea HOM05D000611 ORTHO05D084710 6.1e-06 54.3 54 48.1
CAN.G794.12 Capsicum annuum HOM05D000611 ORTHO05D000809 6.1e-06 54.3 56 53.6
CDE09G0890 Ceratophyllum demersum HOM05D000611 ORTHO05D000809 6.1e-06 54.3 67 43.3
COL.COLO4_13313 Corchorus olitorius HOM05D000611 ORTHO05D000809 6.1e-06 54.3 73 42.5
Eucgr.B02503 Eucalyptus grandis HOM05D000611 ORTHO05D000809 6.1e-06 54.3 52 50.0
PGSC0003DMG400008709 Solanum tuberosum HOM05D000611 ORTHO05D000809 6.1e-06 54.3 54 55.6
TAR633G1455 Trochodendron aralioides HOM05D000611 ORTHO05D000809 6.1e-06 54.3 55 49.1
EL10Ac9g22530 Beta vulgaris HOM05D000611 ORTHO05D000809 7.9e-06 53.9 52 48.1
CDE02G4543 Ceratophyllum demersum HOM05D000611 ORTHO05D000809 7.9e-06 53.9 52 51.9
MBI19_g13629_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 7.9e-06 53.9 69 40.6
PSO339G2027 Papaver somniferum HOM05D000611 ORTHO05D000809 7.9e-06 53.9 55 49.1
PSO384G2333 Papaver somniferum HOM05D000611 ORTHO05D000809 7.9e-06 53.9 54 48.1
Hund22087 Selenicereus undatus HOM05D000611 ORTHO05D000809 7.9e-06 53.9 69 40.6
Sopen01g004660 Solanum pennellii HOM05D000611 ORTHO05D000809 7.9e-06 53.9 56 53.6
TAR365G0057 Trochodendron aralioides HOM05D000611 ORTHO05D000809 7.9e-06 53.9 69 40.6
TAR622G0420 Trochodendron aralioides HOM05D000611 ORTHO05D000809 7.9e-06 53.9 67 41.8
vmacro19665 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 7.9e-06 53.9 69 40.6
HPP92_001900 Vanilla planifolia HOM05D000611 ORTHO05D000809 7.9e-06 53.9 54 51.9


User provided reference genes

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