Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 9.6e-285 983.4 746 100.0
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.3e-209 733.0 649 89.4
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 5.4e-203 711.8 680 84.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 5.0e-201 705.3 696 83.6
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 3.7e-188 662.5 693 79.7
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 2.7e-186 656.4 646 85.3
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 9.5e-184 647.9 651 85.9
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 4.9e-180 635.6 680 64.7
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.7e-169 600.5 692 79.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 9.0e-166 588.2 679 78.5
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 9.0e-166 588.2 674 78.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.0e-165 587.0 671 78.5
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 9.9e-165 584.7 671 79.0
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 9.9e-165 584.7 674 78.5
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.4e-163 580.1 677 78.4
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.0e-162 575.5 671 77.9
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 7.9e-162 575.1 710 77.3
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 7.4e-160 568.5 674 76.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 4.0e-158 562.8 715 73.6
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 5.3e-158 562.4 716 74.9
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 9.9e-157 558.1 658 70.1
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 9.9e-157 558.1 699 67.5
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 1.9e-155 553.9 585 83.1
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 3.2e-155 553.1 662 77.2
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.2e-155 553.1 659 78.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 3.5e-154 549.7 680 56.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.6e-154 549.3 655 79.4
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 4.6e-154 549.3 746 73.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.8e-153 547.4 690 75.2
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 2.3e-153 547.0 714 73.5
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 8.7e-153 545.0 743 72.4
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.5e-152 544.3 673 76.1
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 9.6e-152 541.6 695 75.0
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.8e-151 540.0 629 80.4
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 8.1e-151 538.5 717 72.7
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 8.1e-151 538.5 714 72.8
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-149 534.6 674 76.4
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.6e-149 533.5 659 76.9
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.5e-149 532.7 716 71.6
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 7.1e-147 525.4 724 63.1
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.6e-146 524.2 666 75.7
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 2.1e-146 523.9 686 74.8
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 6.0e-146 522.3 711 72.6
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-144 518.1 716 72.3
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.9e-144 517.3 670 75.8
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 7.4e-144 515.4 669 73.8
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 9.6e-144 515.0 691 73.7
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-142 511.5 638 77.0
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 3.1e-142 510.0 692 73.3
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-141 507.7 710 71.0
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.0e-140 505.0 669 74.4
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.0e-140 505.0 398 68.1
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.1e-138 497.3 706 71.4
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.1e-136 491.5 782 57.4
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.5e-136 491.1 735 67.8
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.3e-136 490.0 740 57.2
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 4.8e-135 486.1 652 73.5
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 4.8e-135 486.1 668 73.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 8.2e-135 485.3 662 73.4
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 9.0e-134 481.9 707 71.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.5e-133 481.1 688 71.5
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.9e-132 476.9 704 70.3
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.2e-130 471.5 727 69.3
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-129 468.0 728 69.2
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.8e-129 467.6 697 71.2
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 8.8e-129 465.3 679 71.3
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.6e-128 463.8 686 71.4
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.5e-125 453.0 734 58.9
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 9.4e-123 445.3 717 49.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.1e-120 438.3 811 48.1
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.2e-119 434.1 654 70.3
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 2.2e-119 434.1 745 53.3
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 8.2e-119 432.2 734 57.6
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 2.4e-118 430.6 655 70.2
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-116 424.5 676 69.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 3.8e-116 423.3 677 68.7
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.1e-115 421.8 788 65.5
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.9e-115 421.0 717 65.8
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 4.2e-115 419.9 657 69.6
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-114 417.9 645 45.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 1.6e-114 417.9 721 64.9
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.7e-114 417.2 720 64.9
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 6.7e-113 412.5 652 65.2
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.0e-112 411.0 698 66.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 2.2e-111 407.5 703 66.4
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 3.7e-111 406.8 657 68.3
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 4.5e-109 399.8 581 64.5
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 7.7e-109 399.1 678 68.1
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.7e-108 397.9 574 73.9
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.9e-108 397.1 660 69.4
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 2.9e-108 397.1 701 66.6
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 8.5e-108 395.6 666 68.6
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.9e-107 394.4 795 47.4
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 4.2e-107 393.3 668 67.5
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 5.5e-107 392.9 691 57.6
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 8.0e-106 389.0 666 68.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 8.8e-105 385.6 668 67.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.4e-104 383.3 669 67.6
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 9.8e-104 382.1 670 67.6
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 2.2e-103 380.9 707 64.9
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.8e-103 380.6 670 67.5
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 3.1e-102 377.1 699 63.2
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 7.0e-102 375.9 635 70.2
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 7.7e-101 372.5 710 65.8
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.5e-99 368.2 614 70.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 3.3e-83 313.9 356 55.6
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.5e-80 302.8 339 54.6
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.5e-77 293.9 386 74.4
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.3e-76 292.0 427 80.3
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 2.6e-72 277.7 354 49.4
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.1e-70 269.6 381 48.6
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 5.1e-68 263.5 578 52.9
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 5.8e-64 250.0 423 77.5
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.9e-63 247.7 357 49.3
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-63 247.3 442 75.6
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 6.2e-58 229.9 280 57.5
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.8e-57 228.4 430 42.3
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.5e-56 225.3 132 84.1
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 3.8e-55 220.7 126 85.7
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 3.0e-52 211.1 646 57.7
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 9.6e-51 206.1 717 52.9
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-50 205.7 425 73.9
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.1e-50 204.9 698 53.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.2e-50 203.4 452 70.4
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.1e-50 203.0 128 75.0
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 2.0e-48 198.4 475 40.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-48 198.0 430 67.9
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 7.6e-40 169.9 165 56.4
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 3.9e-36 157.5 111 67.6
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 8.7e-36 156.4 199 48.2
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 3.3e-35 154.5 207 54.1
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-32 146.0 74 91.9
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 4.5e-32 144.1 117 62.4
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.0e-31 142.9 75 89.3
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.3e-31 142.5 365 44.7
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 1.1e-30 139.4 258 43.0
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-28 131.7 139 53.2
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-27 129.0 264 43.2
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 7.4e-27 126.7 384 71.6
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-26 124.8 136 47.1
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 3.7e-26 124.4 378 72.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.1e-25 122.9 136 46.3
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.3e-25 120.6 136 45.6
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 3.4e-24 117.9 144 45.1
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-23 115.9 428 53.7
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-23 115.5 135 45.9
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.9e-23 114.8 138 44.2
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 8.5e-23 113.2 389 41.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.5e-23 113.2 108 51.9
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.1e-22 112.8 159 52.8
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-22 112.5 138 43.5
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-22 112.5 138 43.5
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.1e-21 108.6 89 55.1
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.6e-21 107.5 120 59.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.0e-20 106.3 164 47.0
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 2.3e-20 105.1 54 98.1
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.8e-18 98.2 77 71.4
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.4e-17 95.9 77 68.8
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.8e-17 95.5 78 55.1
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.4e-17 95.1 351 33.9
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-16 92.4 53 67.9
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-16 92.0 62 66.1
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.6e-16 91.7 365 30.1
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 1.7e-15 89.0 62 74.2
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.4e-14 85.9 122 51.6
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.9e-14 85.5 211 43.1
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.9e-14 85.5 47 83.0
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.9e-14 85.5 47 83.0
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 4.2e-14 84.3 56 75.0
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.2e-14 84.3 176 34.1
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.6e-13 81.3 137 43.8
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-13 81.3 54 63.0
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.9e-13 80.1 54 61.1
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 6.7e-12 77.0 92 50.0
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 9.7e-11 73.2 66 60.6
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.8e-10 71.6 62 62.9
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 1.2e-08 66.2 93 47.3
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.7e-08 63.5 38 68.4
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.5e-07 60.5 74 55.4
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-07 60.1 68 57.4
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 3.2e-06 58.2 61 44.3


User provided reference genes

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