Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 3.1e-113 411.8 200 100.0
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.8e-73 279.6 194 76.8
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.2e-64 250.4 204 67.6
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.2e-64 250.4 204 67.6
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.2e-64 250.4 204 67.6
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.5e-62 243.4 204 64.7
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 2.5e-62 242.7 204 64.2
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 9.4e-62 240.7 204 64.2
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.7e-61 239.2 204 63.7
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.7e-61 238.4 198 64.1
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.7e-61 238.4 198 64.1
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 2.3e-60 236.1 205 63.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 2.3e-60 236.1 204 62.7
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 2.3e-60 236.1 204 62.7
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-60 235.7 204 62.3
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-60 235.7 204 62.3
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 6.7e-60 234.6 204 62.7
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.6e-59 232.6 204 61.8
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.3e-59 232.3 198 63.6
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.3e-59 232.3 198 63.6
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.3e-59 232.3 198 63.6
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.3e-59 232.3 198 63.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 4.4e-59 231.9 193 65.3
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 4.4e-59 231.9 204 61.8
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 5.7e-59 231.5 204 60.3
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.7e-58 229.9 198 63.6
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 6.3e-58 228.0 198 62.1
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 8.2e-58 227.6 224 58.0
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-57 227.3 204 61.3
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.1e-57 225.3 198 61.6
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.7e-55 219.9 204 59.3
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 8.5e-55 217.6 189 61.9
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.5e-54 214.9 193 59.6
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 7.2e-54 214.5 198 57.6
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 7.2e-54 214.5 186 60.8
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-52 209.5 173 63.0
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 5.2e-52 208.4 195 59.5
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 8.8e-52 207.6 204 56.9
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.8e-52 207.6 208 53.4
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 60.1
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 60.1
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 60.1
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 60.1
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 60.1
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.2e-51 207.2 193 59.6
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.4e-51 205.3 187 60.4
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.7e-51 204.9 175 63.4
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 7.5e-51 204.5 206 57.3
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 9.8e-51 204.1 187 61.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.3e-50 201.1 175 61.1
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.2e-48 197.2 179 60.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.0e-47 194.1 175 58.3
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.8e-47 192.2 225 49.8
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.6e-47 191.0 181 59.1
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.9e-46 189.9 226 48.2
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 3.0e-44 182.6 171 60.2
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 8.9e-44 181.0 204 49.5
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 8.9e-44 181.0 204 49.5
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-43 180.3 230 46.5
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.7e-42 176.8 162 61.1
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 2.7e-40 169.5 175 57.7
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 5.9e-40 168.3 194 53.1
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.0e-39 167.5 168 54.2
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.3e-39 167.2 219 45.2
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 2.3e-39 166.4 179 50.8
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.3e-38 161.4 148 62.2
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 9.5e-38 161.0 176 50.0
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 9.5e-38 161.0 176 50.0
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 9.5e-38 161.0 176 50.0
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 9.5e-38 161.0 176 50.0
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 9.5e-38 161.0 176 50.0
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-37 159.8 145 61.4
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.8e-37 159.5 148 61.5
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-36 156.8 154 57.1
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.8e-36 156.8 133 63.9
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 2.9e-34 149.4 109 70.6
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-33 147.5 109 68.8
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.6e-32 143.7 97 73.2
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.6e-32 143.7 148 55.4
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 3.5e-32 142.5 171 52.6
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.6e-32 142.1 163 51.5
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 6.0e-32 141.7 104 70.2
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-31 141.0 107 69.2
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.6e-31 137.9 96 74.0
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 1.1e-30 137.5 169 51.5
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 1.5e-30 137.1 141 59.6
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.5e-30 136.3 101 69.3
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.3e-30 136.0 125 57.6
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 9.5e-30 134.4 130 57.7
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 3.6e-29 132.5 134 54.5
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 6.2e-29 131.7 203 37.9
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.3e-28 129.8 137 53.3
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 4.0e-28 129.0 109 66.1
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 5.2e-28 128.6 84 77.4
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 1.2e-27 127.5 147 48.3
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.4e-27 125.9 120 57.5
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.4e-27 125.6 77 81.8
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-26 122.1 101 63.4
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-26 122.1 101 63.4
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-26 122.1 101 63.4
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.9e-26 122.1 109 60.6
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.9e-25 120.2 106 61.3
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 2.4e-25 119.8 101 64.4
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 7.0e-25 118.2 84 70.2
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 9.2e-25 117.9 109 61.5
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.5e-24 115.9 120 53.3
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 6.0e-24 115.2 114 57.0
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 2.5e-22 109.8 135 45.9
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-21 104.8 73 69.9
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 3.1e-20 102.8 73 68.5
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 4.0e-20 102.4 122 49.2
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.2e-20 102.1 87 62.1
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 2.0e-19 100.1 67 71.6
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.6e-19 99.8 111 51.4
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.4e-19 99.0 72 73.6
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 5.8e-19 98.6 73 64.4
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 7.5e-19 98.2 68 66.2
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 4.9e-18 95.5 60 71.7
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.1e-17 94.4 108 51.9
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 2.3e-15 86.7 69 65.2
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.9e-15 85.9 120 43.3
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.5e-14 84.0 99 45.5
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 1.5e-14 84.0 99 45.5
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.5e-14 84.0 99 45.5
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.5e-14 84.0 99 45.5
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.5e-14 84.0 99 45.5
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.5e-14 84.0 99 45.5
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.3e-14 82.8 99 44.4
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 5.6e-14 82.0 58 74.1
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 5.6e-14 82.0 99 44.4
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 7.3e-14 81.6 62 64.5
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 9.5e-14 81.3 83 48.2
Lalb_Chr23g0274271 Lupinus albus HOM05D002578 ORTHO05D005154 1.2e-13 80.9 53 67.9
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-13 79.7 69 60.9
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 3.6e-13 79.3 60 63.3
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 4.7e-13 79.0 49 71.4
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 6.2e-13 78.6 48 70.8
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 6.2e-13 78.6 95 44.2
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.1e-12 77.8 99 42.4
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.4e-12 77.4 51 72.5
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 3.1e-12 76.3 52 73.1
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 5.2e-12 75.5 60 66.7
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 8.9e-12 74.7 60 66.7
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 8.9e-12 74.7 60 66.7
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 8.9e-12 74.7 79 48.1
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 1.2e-11 74.3 60 65.0
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 1.2e-11 74.3 60 65.0
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.2e-11 74.3 84 46.4
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.5e-11 73.9 54 70.4
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 3.4e-11 72.8 60 65.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 3.4e-11 72.8 76 48.7
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.4e-11 72.4 54 68.5
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 5.8e-11 72.0 98 41.8
arahy.Tifrunner.gnm1.ann1.HB4K1E Arachis hypogaea HOM05D002578 ORTHO05D005154 9.9e-11 71.2 37 81.1
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.3e-10 70.9 75 49.3
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.7e-10 70.5 52 69.2
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 4.9e-10 68.9 54 66.7
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.4e-10 68.6 49 67.3
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.4e-09 67.4 60 55.0
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 2.4e-09 66.6 42 78.6
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.6e-08 63.9 54 59.3
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 7.8e-08 61.6 49 61.2
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-07 60.5 75 46.7
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 3.9e-07 59.3 100 39.0
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 4.3e-06 55.8 57 50.9
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 9.6e-06 54.7 83 42.2


User provided reference genes

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