Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 0.0e+00 1099.7 557 100.0
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 2.7e-231 805.4 606 70.8
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 4.6e-231 804.7 608 71.7
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 7.3e-229 797.3 601 70.0
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 3.5e-223 778.5 604 69.4
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.0e-222 776.9 604 69.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 8.6e-222 773.9 611 68.6
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.1e-221 773.5 605 69.3
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 5.6e-221 771.2 608 69.1
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 7.3e-221 770.8 610 68.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.7e-217 758.4 600 69.7
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.1e-213 746.9 603 67.0
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 3.3e-213 745.3 609 66.2
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.6e-212 743.0 608 66.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.5e-189 666.8 603 59.7
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 9.0e-187 657.5 600 58.2
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.7e-185 653.3 605 57.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.4e-184 650.2 603 57.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.2e-184 649.0 605 58.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 7.1e-184 647.9 605 57.5
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-183 646.7 598 57.7
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.1e-183 646.4 606 58.4
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 4.6e-183 645.2 601 57.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.3e-182 643.7 601 57.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.3e-182 643.7 609 56.0
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.8e-182 643.3 593 57.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 3.9e-182 642.1 604 57.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 9.6e-181 637.5 603 56.4
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.8e-180 636.0 600 58.0
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.8e-180 636.0 604 56.8
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.7e-180 635.6 603 56.2
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 5.3e-179 631.7 603 57.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 6.9e-179 631.3 598 57.2
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 9.0e-179 630.9 600 55.0
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.2e-177 626.3 599 55.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 6.5e-177 624.8 605 55.2
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.1e-176 624.0 607 55.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.1e-176 624.0 599 55.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.4e-176 623.6 597 57.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.4e-176 623.6 603 55.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.9e-176 623.2 603 54.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 7.1e-176 621.3 598 55.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 9.3e-176 620.9 603 55.4
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-175 620.5 594 57.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 3.5e-175 619.0 599 55.1
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 6.0e-175 618.2 619 54.4
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 7.9e-175 617.8 598 55.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.3e-174 617.1 618 54.2
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.8e-174 616.7 598 55.4
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.8e-174 616.7 595 55.1
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.8e-174 616.7 605 54.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 3.9e-174 615.5 595 54.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.5e-173 613.6 616 52.9
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.9e-173 613.2 599 55.1
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.9e-173 613.2 603 54.6
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.5e-173 612.8 599 55.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.3e-173 612.5 599 55.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 3.3e-173 612.5 485 68.9
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.7e-173 611.7 598 54.8
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 7.4e-173 611.3 599 55.1
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 7.4e-173 611.3 638 53.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 9.6e-173 610.9 594 54.9
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.3e-172 610.5 602 54.3
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.6e-172 610.1 599 55.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.6e-172 610.1 540 59.3
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.1e-172 609.8 596 54.5
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.8e-172 609.4 607 53.5
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 4.8e-172 608.6 602 54.5
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.8e-172 608.6 596 54.9
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.1e-171 607.4 605 53.9
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.8e-171 606.7 605 54.9
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 6.9e-171 604.7 469 70.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.2e-170 604.0 592 55.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.0e-170 603.2 592 55.1
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.0e-170 603.2 602 54.5
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 5.9e-170 601.7 564 55.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.9e-170 601.7 630 53.2
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.0e-169 600.9 592 54.7
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.7e-169 600.1 594 53.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 3.8e-169 599.0 606 54.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.8e-169 599.0 585 54.0
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 5.0e-169 598.6 603 54.2
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.4e-168 597.0 599 54.1
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.5e-168 596.3 595 54.8
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.2e-168 595.9 563 54.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.2e-168 594.7 551 58.1
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.2e-167 594.0 605 53.7
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.2e-167 594.0 478 61.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.6e-167 593.6 530 57.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.6e-167 593.6 479 61.2
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 4.6e-167 592.0 605 53.2
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 4.6e-167 592.0 598 53.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.0e-166 590.9 612 53.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.3e-166 590.5 602 53.0
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.3e-166 589.7 595 54.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.5e-165 586.3 588 54.4
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.3e-165 585.5 594 54.5
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.3e-164 583.9 600 53.8
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 6.9e-163 578.2 599 51.9
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.2e-162 577.4 596 53.7
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 3.6e-159 565.8 603 52.9
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.0e-158 564.3 604 50.8
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.7e-156 557.0 599 49.6
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-156 557.0 602 52.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 6.3e-156 555.1 602 52.5
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.4e-155 553.1 602 52.5
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.1e-155 552.7 522 55.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 6.9e-155 551.6 602 51.3
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.9e-155 551.6 602 51.3
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.4e-154 549.3 573 54.1
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.5e-153 545.0 602 52.0
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.5e-152 543.1 602 51.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.2e-151 540.8 618 49.4
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.4e-149 531.6 598 49.5
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 1.7e-148 530.4 599 50.1
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 3.7e-148 529.3 602 51.2
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.5e-146 522.7 596 49.8
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 8.5e-145 518.1 498 54.8
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.6e-143 513.8 602 47.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 3.3e-141 506.1 584 49.7
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.7e-137 493.8 558 47.7
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.5e-133 480.7 605 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.4e-131 474.2 617 42.1
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.2e-127 461.1 358 71.8
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.0e-126 456.1 590 43.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.7e-121 440.7 596 45.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.9e-116 422.5 443 51.2
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 6.8e-110 402.1 584 41.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.6e-106 391.0 314 64.6
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 5.0e-105 386.0 396 56.1
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.3e-102 377.1 325 60.9
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 7.5e-101 372.1 425 44.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 3.2e-99 366.7 620 36.9
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 7.1e-91 339.0 429 43.4
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 7.6e-77 292.4 267 56.6
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-73 281.6 358 47.2
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 8.1e-71 272.3 517 35.2
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.0e-69 267.7 221 62.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-60 238.4 183 67.2
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.0e-57 228.8 462 35.5
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 4.5e-53 213.4 180 68.3
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 9.1e-46 189.1 225 47.6
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.1e-46 189.1 182 63.2
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.2e-44 184.5 107 72.9
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.5e-43 181.0 380 36.1
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.2e-39 166.0 162 53.7
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-35 154.8 109 71.6
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.1e-34 151.4 132 59.8
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.7e-28 131.7 80 77.5
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.8e-25 121.7 133 52.6
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 9.1e-22 109.4 203 39.9
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 2.7e-21 107.8 68 73.5
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 7.7e-21 106.3 118 48.3
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 5.5e-19 100.1 82 58.5
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 4.7e-18 97.1 56 80.4
Medtr6g022580 Medicago truncatula HOM05D004159 ORTHO05D005858 6.8e-17 93.2 136 47.1
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 9.8e-16 89.4 113 44.2
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.3e-15 89.0 113 43.4
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.5e-13 80.5 47 72.3
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.5e-13 80.5 47 72.3
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 5.5e-11 73.6 80 46.2
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 4.0e-09 67.4 73 49.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 8.3e-07 59.7 61 54.1
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 9.2e-06 56.2 102 44.1


User provided reference genes

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