Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 2062.3 1080 100.0
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1861.7 1073 90.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1847.4 1081 89.6
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1793.5 1076 86.8
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1744.9 1076 84.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1653.3 949 88.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1645.6 1000 83.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1629.4 1083 76.4
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1619.4 1091 75.3
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1608.6 1013 79.2
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1607.8 1078 75.3
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1603.2 1088 75.3
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1597.8 1081 75.1
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1597.0 1077 74.7
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1596.3 1077 75.3
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1595.5 1006 78.3
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1591.6 1077 75.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1590.9 1076 76.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1583.5 1076 76.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1583.5 1092 73.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1583.2 1079 74.6
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1568.9 1076 73.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1096 73.3
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1565.4 1083 73.8
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1133 71.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1555.4 1088 73.4
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1083 72.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1549.6 1088 72.8
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1544.3 1002 75.6
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1541.9 1076 72.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1541.6 1012 74.9
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1541.2 1086 72.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1088 72.7
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1078 72.4
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1538.1 999 75.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1537.7 1002 75.3
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1534.6 1078 71.3
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1084 71.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1530.8 1035 75.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1524.6 1014 75.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1522.7 1012 74.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1521.5 1089 71.5
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1518.8 1000 75.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1515.4 1079 72.4
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1514.6 1076 70.7
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1513.0 999 75.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1510.0 1079 71.7
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1504.6 1088 71.5
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1501.5 1089 70.5
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1500.7 1084 70.9
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1499.2 1035 72.9
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1498.0 1090 70.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1492.6 950 78.4
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1483.0 1042 72.0
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1482.2 1000 73.9
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1481.5 1019 72.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1478.8 1014 73.2
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1475.3 1000 73.8
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1472.6 1001 73.8
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 973 75.4
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1468.8 1015 73.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1464.1 1009 73.8
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1454.9 1105 68.1
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1448.7 1158 65.6
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1442.6 1010 71.8
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 967 75.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1436.0 990 72.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1426.8 1012 69.6
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1416.7 951 75.8
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1416.7 1007 69.1
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1410.2 1229 62.2
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1401.3 1092 66.8
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1401.3 1101 67.0
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1399.0 1003 69.7
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1397.5 979 71.7
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1335.1 980 67.7
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1312.7 870 75.9
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1281.2 1030 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1271.1 1002 63.7
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1268.4 822 76.4
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1264.6 1211 57.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1249.6 1007 62.0
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1232.2 1004 62.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1229.9 1135 58.4
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1228.8 899 70.2
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 0.0e+00 1171.4 1080 64.4
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1164.1 1003 57.7
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1082.4 1059 55.5
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 4.0e-308 1061.6 1012 55.3
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 6.8e-300 1034.2 641 79.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.3e-295 1019.2 753 67.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.8e-290 1001.9 1110 52.6
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 5.1e-287 991.5 1012 51.1
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.4e-284 983.4 1042 50.7
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 4.2e-281 971.8 590 86.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.5e-254 882.9 544 78.5
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.8e-228 797.0 509 80.0
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.0e-220 768.5 586 65.5
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 3.3e-209 733.0 520 72.5
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 5.0e-202 709.1 619 62.2
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.6e-195 686.0 474 72.4
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.1e-191 673.3 397 85.1
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.8e-181 639.8 816 49.0
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 9.6e-177 625.2 462 69.5
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.1e-168 597.4 328 93.6
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 4.8e-168 596.3 412 72.1
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 1.2e-158 565.1 398 73.6
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 1.4e-156 558.1 347 84.4
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 7.9e-155 552.4 392 76.0
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 7.9e-155 552.4 630 51.6
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.4e-124 449.1 325 72.3
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 3.6e-123 447.2 350 68.6
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.0e-122 444.1 287 77.0
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.7e-112 411.8 294 69.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.6e-105 387.9 817 36.0
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.5e-100 371.3 192 89.1
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.2e-91 342.4 243 70.8
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.0e-85 321.2 300 50.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.9e-77 294.3 143 93.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 3.5e-54 218.0 183 64.5
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.0e-53 214.9 142 72.5
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 3.3e-52 211.5 188 63.8
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.2e-48 198.7 102 89.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.1e-45 187.6 149 61.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.1e-39 169.9 104 80.8
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.8e-35 155.2 105 70.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 6.3e-35 154.1 128 60.9
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.1e-34 153.3 148 53.4
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 5.3e-34 151.0 98 78.6
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-33 149.4 193 44.6
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-31 143.3 203 42.9
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 2.5e-31 142.1 128 57.8
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-31 141.4 114 61.4
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.1e-30 139.0 114 64.0
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 2.2e-27 129.0 92 66.3
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 3.7e-27 128.3 92 76.1
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 5.3e-26 124.4 99 63.6
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.0e-25 122.5 160 49.4
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.8e-21 109.4 139 51.1
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.8e-21 109.4 139 51.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.7e-19 102.8 194 36.1
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 6.3e-19 100.9 60 88.3
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.1e-18 100.1 69 69.6
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.4e-18 99.0 73 67.1
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.1e-15 90.1 55 81.8
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.4e-15 87.0 64 68.8
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 3.9e-13 81.6 109 46.8
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 8.8e-13 80.5 45 84.4
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 9.7e-12 77.0 51 74.5
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-11 76.6 51 74.5
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-11 76.6 51 74.5
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 6.3e-11 74.3 51 72.5
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.1e-10 73.6 43 83.7
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 1.8e-10 72.8 51 70.6
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 9.1e-10 70.5 54 64.8
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.5e-09 68.6 65 60.0
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.1e-07 63.5 55 58.2
TPR.G20792 Trifolium pratense HOM05D004422 ORTHO05D021544 1.6e-06 59.7 31 93.5
TPR.G40130 Trifolium pratense HOM05D004422 ORTHO05D013213 1.6e-06 59.7 35 88.6
TPR.G2648 Trifolium pratense HOM05D004422 ORTHO05D413231 2.1e-06 59.3 31 87.1
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 8.0e-06 57.4 45 62.2


User provided reference genes

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