Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g005255 Medicago truncatula HOM05D000361 ORTHO05D005006 8.3e-42 173.3 90 100.0
Ca_09208_v3 Cicer arietinum L. HOM05D000361 ORTHO05D005006 4.0e-20 101.3 55 92.7
Medtr7g109480 Medicago truncatula HOM05D000361 ORTHO05D005006 8.9e-20 100.1 55 92.7
Psat3g019960 Pisum sativum HOM05D000361 ORTHO05D005006 1.2e-19 99.8 55 90.9
TPR.G4047 Trifolium pratense HOM05D000361 ORTHO05D005006 1.5e-19 99.4 55 90.9
Lalb_Chr04g0259941 Lupinus albus HOM05D000361 ORTHO05D005006 3.4e-19 98.2 55 90.9
Atru.chr5.1004 Acer truncatum HOM05D000361 ORTHO05D005006 3.8e-18 94.7 55 87.3
Ciclev10019324m.g Citrus clementina HOM05D000361 ORTHO05D005006 4.9e-18 94.4 55 87.3
Gohir.D11G114800 Gossypium hirsutum HOM05D000361 ORTHO05D005006 6.4e-18 94.0 55 85.5
MD01G1012600 Malus domestica HOM05D000361 ORTHO05D005006 6.4e-18 94.0 55 85.5
MD03G1295400 Malus domestica HOM05D000361 ORTHO05D005006 6.4e-18 94.0 55 85.5
AL6G51180 Arabidopsis lyrata HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
AT4G02060 Arabidopsis thaliana HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BcaB01g02083 Brassica carinata HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BcaC01g06779 Brassica carinata HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BcaC04g24032 Brassica carinata HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
A03p31270 Brassica napus HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
A09p01520 Brassica napus HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
C03p38170 Brassica napus HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
C09p01630 Brassica napus HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BolC3t16098H Brassica oleracea HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BolC9t53096H Brassica oleracea HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BraA03t12307Z Brassica rapa HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
BraA09t35812Z Brassica rapa HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
CAN.G777.10 Capsicum annuum HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 83.6
CARHR249620 Cardamine hirsuta HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
Thhalv10028471m.g Eutrema salsugineum HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
Sp6g01940 Schrenkiella parvula HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 85.5
Solyc01g079500.4 Solanum lycopersicum HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 83.6
Sopen01g031270 Solanum pennellii HOM05D000361 ORTHO05D005006 8.4e-18 93.6 55 83.6
MSTRG.18104 Avicennia marina HOM05D000361 ORTHO05D005006 1.1e-17 93.2 55 83.6
Gohir.A11G109800 Gossypium hirsutum HOM05D000361 ORTHO05D005006 1.1e-17 93.2 55 85.5
Gorai.007G123000 Gossypium raimondii HOM05D000361 ORTHO05D005006 1.1e-17 93.2 55 85.5
Potri.014G121000 Populus trichocarpa HOM05D000361 ORTHO05D005006 1.1e-17 93.2 55 85.5
Cc01_g21380 Coffea canephora HOM05D000361 ORTHO05D005006 1.4e-17 92.8 55 83.6
COL.COLO4_23235 Corchorus olitorius HOM05D000361 ORTHO05D005006 1.4e-17 92.8 55 85.5
Duzib133G0702 Durio zibethinus HOM05D000361 ORTHO05D005006 1.4e-17 92.8 55 85.5
PGSC0003DMG400009040 Solanum tuberosum HOM05D000361 ORTHO05D005006 1.4e-17 92.8 55 83.6
THA.LOC104801305 Tarenaya hassleriana HOM05D000361 ORTHO05D005006 1.4e-17 92.8 55 85.5
AUR62011814 Chenopodium quinoa HOM05D000361 ORTHO05D005006 1.9e-17 92.4 55 80.0
Prupe.8G272000 Prunus persica HOM05D000361 ORTHO05D005006 1.9e-17 92.4 55 83.6
CiPaw.07G117300 Carya illinoinensis HOM05D000361 ORTHO05D005006 2.4e-17 92.0 55 81.8
ClCG09G005120 Citrullus lanatus HOM05D000361 ORTHO05D005006 2.4e-17 92.0 55 83.6
MELO3C015926.2 Cucumis melo HOM05D000361 ORTHO05D005006 2.4e-17 92.0 55 83.6
Os12g0560700 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D005006 2.4e-17 92.0 56 82.1
SalBow2G0319 Salvia bowleyana HOM05D000361 ORTHO05D005006 2.4e-17 92.0 55 83.6
Aa31LG5G1690 Aethionema arabicum HOM05D000361 ORTHO05D005006 3.2e-17 91.7 55 81.8
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 3.2e-17 91.7 55 81.8
CsaV3_7G029940 Cucumis sativus L. HOM05D000361 ORTHO05D005006 3.2e-17 91.7 55 83.6
HanXRQChr06g0168201 Helianthus annuus HOM05D000361 ORTHO05D005006 3.2e-17 91.7 55 81.8
Peaxi162Scf00691g00215 Petunia axillaris HOM05D000361 ORTHO05D005006 3.2e-17 91.7 55 83.6
Haze_05038 Corylus avellana HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
Lsat_1_v5_gn_7_101281 Lactuca sativa HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
Lj1g0011090 Lotus japonicus HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
MBI18_g31678_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D005006 4.2e-17 91.3 56 80.4
QL12p019977 Quercus lobata HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
RcHm_v2.0_Chr7g0241501 Rosa chinensis HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 83.6
SGA_v2.0_scaffold8G04571 Striga asiatica HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
Thecc.01G313100 Theobroma cacao HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 83.6
GSVIVG01028118001 Vitis vinifera HOM05D000361 ORTHO05D005006 4.2e-17 91.3 55 81.8
arahy.Tifrunner.gnm1.ann1.1KN0VJ Arachis hypogaea HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 80.0
arahy.Tifrunner.gnm1.ann1.KD1TI7 Arachis hypogaea HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 80.0
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
Duzib138G1298 Durio zibethinus HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 83.6
Migut.D00627 Erythranthe guttata HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
Migut.K01491 Erythranthe guttata HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
Migut.L00246 Erythranthe guttata HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
Glyma.03G219200 Glycine max HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
Lj1A17T32 Lonicera japonica HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 78.2
Manes.05G003100 Manihot esculenta HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 83.6
Phvul.001G212600 Phaseolus vulgaris HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
VMungo1383G3610 Vigna mungo HOM05D000361 ORTHO05D005006 5.4e-17 90.9 55 81.8
CSS0002573 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 81.8
Migut.K01501 Erythranthe guttata HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 81.8
FvH4_5g39230 Fragaria vesca HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
FAN04G2249 Fragaria x ananassa HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
FAN08G3462 Fragaria x ananassa HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
FAN08G3478 Fragaria x ananassa HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
FAN13G2584 Fragaria x ananassa HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
FAN18G2212 Fragaria x ananassa HOM05D000361 ORTHO05D005006 7.1e-17 90.5 55 83.6
Carub.0006s3517 Capsella rubella HOM05D000361 ORTHO05D005006 9.2e-17 90.1 55 83.6
TAR636G2453 Trochodendron aralioides HOM05D000361 ORTHO05D005006 9.2e-17 90.1 55 80.0
Rhsim01G0290500 Rhododendron simsii HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 78.2
Rhsim04G0219200 Rhododendron simsii HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 78.2
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 81.8
Sed0026353 Sechium edule HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 81.8
unitig_0.g278 Utricularia gibba HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 80.0
vmacro15112 Vaccinium macrocarpon HOM05D000361 ORTHO05D005006 1.2e-16 89.7 55 78.2
CANSAT25G2674 Cannabis sativa HOM05D000361 ORTHO05D005006 1.6e-16 89.4 55 81.8
AUR62024658 Chenopodium quinoa HOM05D000361 ORTHO05D005006 1.6e-16 89.4 55 78.2
Glyma.19G216100 Glycine max HOM05D000361 ORTHO05D005006 1.6e-16 89.4 55 81.8
Hma1.2p1_0486F.1_g163240 Hydrangea macrophylla HOM05D000361 ORTHO05D005006 1.6e-16 89.4 55 80.0
TWI36G0681 Tripterygium wilfordii HOM05D000361 ORTHO05D005006 1.6e-16 89.4 55 80.0
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 2.1e-16 89.0 55 78.2
Migut.K01506 Erythranthe guttata HOM05D000361 ORTHO05D005006 2.1e-16 89.0 60 73.3
Nn4g25602 Nelumbo nucifera HOM05D000361 ORTHO05D005006 2.1e-16 89.0 55 78.2
Actinidia25846 Actinidia chinensis HOM05D000361 ORTHO05D005006 2.7e-16 88.6 55 78.2
Hund09629 Selenicereus undatus HOM05D000361 ORTHO05D005006 2.7e-16 88.6 55 76.4
CDE05G0987 Ceratophyllum demersum HOM05D000361 ORTHO05D005006 3.5e-16 88.2 56 78.6
Migut.L00822 Erythranthe guttata HOM05D000361 ORTHO05D005006 3.5e-16 88.2 55 80.0
Nitab4.5_0011075g0010 Nicotiana tabacum HOM05D000361 ORTHO05D005006 3.5e-16 88.2 55 80.0
Sc24g0003240 Simmondsia chinensis HOM05D000361 ORTHO05D005006 3.5e-16 88.2 55 76.4
Ah.02g112300 Amaranthus hybridus HOM05D000361 ORTHO05D005006 6.0e-16 87.4 55 74.5
Aqoxy2G02772 Aquilegia oxysepala HOM05D000361 ORTHO05D005006 6.0e-16 87.4 55 76.4
Cpa.g.sc18.41 Carica papaya HOM05D000361 ORTHO05D005006 6.0e-16 87.4 55 80.0
Eucgr.H01043 Eucalyptus grandis HOM05D000361 ORTHO05D005006 7.8e-16 87.0 55 76.4
Actinidia20999 Actinidia chinensis HOM05D000361 ORTHO05D005006 1.0e-15 86.7 55 76.4
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.0e-15 86.7 55 80.0
PGR119G0744 Punica granatum HOM05D000361 ORTHO05D005006 1.3e-15 86.3 55 76.4
Zm00001eb028400 Zea mays HOM05D000361 ORTHO05D005006 1.3e-15 86.3 56 78.6
Zm00001eb137000 Zea mays HOM05D000361 ORTHO05D005006 1.3e-15 86.3 56 78.6
Manes.01G227600 Manihot esculenta HOM05D000361 ORTHO05D005006 1.7e-15 85.9 52 82.7
SHI27170 Sapria himalayana HOM05D000361 ORTHO05D005006 1.7e-15 85.9 55 78.2
ATR0706G090 Amborella trichopoda HOM05D000361 ORTHO05D005006 3.9e-15 84.7 56 75.0
PSO170G2199 Papaver somniferum HOM05D000361 ORTHO05D005006 1.1e-14 83.2 55 72.7
PSO357G0136 Papaver somniferum HOM05D000361 ORTHO05D005006 1.1e-14 83.2 55 72.7
Cc02_g10860 Coffea canephora HOM05D000361 ORTHO05D005006 1.9e-14 82.4 50 80.0
MD11G1314600 Malus domestica HOM05D000361 ORTHO05D005006 1.9e-14 82.4 48 83.3
SEGI_30867 Sequoiadendron giganteum HOM05D000361 ORTHO05D005006 3.6e-13 78.2 56 67.9
SEGI_31855 Sequoiadendron giganteum HOM05D000361 ORTHO05D005006 3.6e-13 78.2 56 67.9
AagrBONN_evm.TU.Sc2ySwM_340.492 Anthoceros agrestis HOM05D000361 ORTHO05D005006 4.7e-13 77.8 55 63.6
CBR_g49870 Chara braunii HOM05D000361 ORTHO05D005006 1.4e-12 76.3 55 63.6
Pp3c11_23510 Physcomitrium patens HOM05D000361 ORTHO05D005006 3.1e-12 75.1 55 65.5
SMO367G1185 Selaginella moellendorffii HOM05D000361 ORTHO05D005006 1.2e-11 73.2 55 63.6
Mapoly0075s0022 Marchantia polymorpha HOM05D000361 ORTHO05D005006 4.4e-11 71.2 55 58.2
Lsat_1_v5_gn_1_79981 Lactuca sativa HOM05D000361 ORTHO05D005006 1.3e-10 69.7 42 76.2
Lsat_1_v5_gn_3_68481 Lactuca sativa HOM05D000361 ORTHO05D005006 1.3e-10 69.7 42 76.2
Lsat_1_v5_gn_4_144501 Lactuca sativa HOM05D000361 ORTHO05D005006 1.3e-10 69.7 42 76.2
HanXRQChr10g0315641 Helianthus annuus HOM05D000361 ORTHO05D005006 7.8e-08 60.5 35 82.9
MCO01G344 Micromonas commoda HOM05D000361 ORTHO05D005006 7.8e-08 60.5 59 52.5
EL10As5g23528 Beta vulgaris HOM05D000361 ORTHO05D005006 2.5e-06 55.5 35 71.4
Cre10.g455850 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D005006 5.6e-06 54.3 62 53.2


User provided reference genes

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