Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.6e-24 114.4 52 100.0
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 94.2
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 3.8e-23 110.5 51 96.1
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 6.5e-23 109.8 52 94.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 90.4
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 4.2e-22 107.1 52 90.4
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 4.2e-22 107.1 52 90.4
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 4.2e-22 107.1 52 90.4
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 88.5
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 88.5
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 9.4e-22 105.9 52 88.5
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 9.4e-22 105.9 52 90.4
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 90.4
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 88.5
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 88.5
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 88.5
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 88.5
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.0e-20 102.4 53 90.6
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.0e-20 102.4 52 86.5
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 84.6
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 86.5
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.8e-20 101.7 50 90.0
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.8e-20 101.7 52 86.5
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 2.3e-20 101.3 50 88.0
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 84.6
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 8.8e-20 99.4 52 86.5
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 86.5
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 2.0e-19 98.2 50 86.0
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 83.0
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 86.8
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 84.9
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 84.9
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 86.8
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 5.7e-19 96.7 48 87.5
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 5.7e-19 96.7 47 89.4
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 7.5e-19 96.3 47 89.4
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 82.7
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 82.7
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 2.2e-18 94.7 46 87.0
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.7e-18 94.0 51 80.4
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 4.8e-18 93.6 50 82.0
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 88.6
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 88.6
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 8.2e-18 92.8 50 78.0
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 8.2e-18 92.8 44 88.6
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.1e-17 92.4 46 87.0
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.8e-17 91.7 46 84.8
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.8e-17 91.7 45 86.7
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.8e-17 91.7 49 83.7
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-17 91.3 44 86.4
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 2.4e-17 91.3 54 79.6
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.1e-17 90.9 46 82.6
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.1e-17 90.9 46 82.6
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.1e-17 90.9 46 82.6
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.1e-17 90.5 53 75.5
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.1e-17 90.5 53 75.5
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 5.3e-17 90.1 50 82.0
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 5.3e-17 90.1 50 82.0
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 5.3e-17 90.1 46 82.6
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 7.0e-17 89.7 44 86.4
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 9.1e-17 89.4 48 79.2
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 86.4
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 86.4
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 86.4
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 86.4
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 86.4
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.0e-16 88.2 45 84.4
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 2.0e-16 88.2 45 84.4
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 2.0e-16 88.2 44 84.1
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 2.0e-16 88.2 54 77.8
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 3.5e-16 87.4 44 84.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.7e-16 86.3 44 81.8
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.7e-16 86.3 53 73.6
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 47 74.5
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 47 74.5
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 46 84.8
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 49 77.6
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.7e-15 85.1 42 85.7
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.2e-15 84.7 67 64.2
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 2.2e-15 84.7 44 81.8
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.9e-15 84.3 40 87.5
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 3.8e-15 84.0 45 84.4
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 6.5e-15 83.2 43 81.4
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 8.5e-15 82.8 52 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.1e-14 82.4 43 81.4
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.5e-14 81.3 44 81.8
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 3.2e-14 80.9 43 79.1
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.4e-14 79.3 45 80.0
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.2e-13 79.0 47 76.6
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.2e-13 79.0 47 76.6
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.2e-13 79.0 53 69.8
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.6e-13 77.4 42 76.2
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.6e-13 77.4 66 59.1
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 4.7e-13 77.0 45 71.1
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.3e-12 74.7 43 69.8
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 2.3e-12 74.7 84 48.8
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 2.0e-11 71.6 54 61.1
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.7e-10 68.6 39 71.8
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 2.8e-10 67.8 34 85.3
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 2.8e-10 67.8 83 48.2
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 6.3e-10 66.6 41 73.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.1e-09 65.9 35 80.0
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-09 64.3 32 81.2
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 5.4e-09 63.5 58 48.3
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 7.0e-09 63.2 31 90.3
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 7.0e-09 63.2 31 90.3
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 7.0e-09 63.2 38 68.4
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 3.5e-08 60.8 57 49.1
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.5e-08 60.8 57 49.1
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 5.9e-08 60.1 57 49.1
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.3e-07 58.9 45 55.6
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 8.5e-07 56.2 37 56.8


User provided reference genes

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