Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 1.5e-248 862.4 442 100.0
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 6.4e-188 661.0 476 76.5
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.4e-174 615.9 474 70.3
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 3.9e-169 598.6 474 70.0
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 2.5e-163 579.3 436 71.8
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 7.4e-152 541.2 461 63.3
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 9.1e-150 534.3 467 63.2
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 1.1e-147 527.3 462 63.0
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 5.5e-147 525.0 461 62.5
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 4.0e-145 518.8 468 61.1
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 1.7e-140 503.4 460 61.5
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 3.8e-140 502.3 454 61.5
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 7.8e-117 424.9 463 49.7
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 2.3e-113 413.3 458 50.9
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 3.2e-110 402.9 465 49.2
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 5.4e-110 402.1 444 50.5
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 7.3e-107 391.7 465 48.8
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 5.2e-105 385.6 469 47.8
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 5.8e-104 382.1 469 48.4
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.7e-103 380.6 484 47.7
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 2.9e-103 379.8 476 48.1
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 4.9e-103 379.0 474 46.6
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 6.4e-103 378.6 469 46.5
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.5e-101 372.9 486 47.5
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 3.5e-101 372.9 464 47.0
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 2.3e-100 370.2 465 47.1
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 2.5e-99 366.7 461 45.8
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 9.6e-99 364.8 469 46.1
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.1e-98 363.6 463 47.3
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 5.2e-97 359.0 475 43.8
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 6.8e-97 358.6 475 44.4
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 3.4e-96 356.3 451 45.9
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 6.4e-95 352.1 468 45.9
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 4.2e-94 349.4 454 44.1
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 9.3e-94 348.2 432 46.5
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.6e-93 347.4 414 46.4
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 3.5e-93 346.3 407 48.4
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 1.3e-92 344.4 454 43.6
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 1.7e-92 344.0 456 46.1
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 2.3e-92 343.6 325 58.2
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.9e-92 342.8 463 46.0
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 8.7e-92 341.7 442 43.4
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 2.5e-91 340.1 452 44.5
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 4.3e-91 339.3 441 45.1
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 7.3e-91 338.6 442 43.7
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 2.8e-90 336.7 471 43.1
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 8.1e-90 335.1 450 45.3
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 8.1e-90 335.1 451 44.1
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 2.4e-89 333.6 481 42.2
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 4.0e-89 332.8 446 43.7
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 5.3e-89 332.4 439 43.5
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 5.3e-89 332.4 439 44.4
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 1.5e-88 330.9 446 44.2
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 1.5e-88 330.9 460 43.5
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 1.3e-87 327.8 455 43.3
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 4.9e-87 325.9 442 42.8
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 4.9e-87 325.9 447 44.1
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 6.4e-87 325.5 435 44.8
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 1.6e-85 320.9 449 42.5
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 4.6e-85 319.3 449 42.5
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 1.3e-84 317.8 414 43.2
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 4.3e-83 312.8 445 41.6
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 9.6e-83 311.6 449 43.2
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 1.6e-82 310.8 446 42.4
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 2.1e-82 310.5 432 43.1
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 6.2e-82 308.9 415 42.7
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.6e-80 303.5 352 48.0
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 4.5e-80 302.8 450 40.4
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 9.9e-80 301.6 437 43.2
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 1.3e-79 301.2 437 42.8
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 2.2e-79 300.4 437 43.2
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 3.8e-79 299.7 438 43.4
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 8.4e-79 298.5 440 41.6
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 1.9e-78 297.4 437 43.2
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 2.4e-78 297.0 437 43.2
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 3.2e-78 296.6 437 43.2
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 4.2e-78 296.2 437 41.9
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 7.1e-78 295.4 442 39.1
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 1.2e-77 294.7 437 41.4
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 4.6e-77 292.7 437 42.8
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 3.9e-76 289.7 437 41.4
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 1.5e-75 287.7 378 42.6
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 4.3e-75 286.2 443 39.7
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 4.8e-74 282.7 426 41.8
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 6.9e-73 278.9 462 40.5
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 1.2e-72 278.1 455 39.3
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 1.3e-71 274.6 461 37.7
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 2.2e-71 273.9 448 39.5
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 4.2e-70 269.6 357 43.7
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 4.2e-70 269.6 421 39.7
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 6.7e-68 262.3 299 49.8
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 9.6e-67 258.5 446 37.2
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 1.6e-66 257.7 436 36.5
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 4.8e-66 256.1 342 46.2
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 3.3e-59 233.4 302 44.0
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 4.2e-54 216.5 466 33.3
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 4.3e-51 206.5 425 35.5
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.2e-48 198.4 305 39.7
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 2.5e-46 190.7 142 66.2
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 2.4e-41 174.1 295 44.7
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.2e-39 167.5 118 67.8
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.9e-38 164.5 118 66.9
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.9e-38 164.5 118 66.9
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 2.3e-36 157.5 354 33.1
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 6.7e-36 156.0 180 48.3
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 3.3e-35 153.7 152 59.2
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 6.5e-31 139.4 118 60.2
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 6.3e-26 122.9 116 54.3
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 2.7e-24 117.5 143 47.6
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.5e-19 101.7 253 30.8
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 2.0e-19 101.3 86 60.5
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 2.4e-17 94.4 187 29.9
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 2.4e-17 94.4 187 29.9
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 5.0e-15 86.7 463 22.5
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 4.7e-13 80.1 430 23.3
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 8.0e-13 79.3 104 43.3
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 7.5e-11 72.8 118 34.7
arahy.Tifrunner.gnm1.ann1.SUI2IU Arachis hypogaea HOM05D006143 ORTHO05D007587 1.1e-09 68.9 51 62.7
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.8e-09 68.2 111 34.2
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 1.0e-07 62.4 54 51.9
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 6.6e-07 59.7 64 54.7
TPR.G16274 Trifolium pratense HOM05D006143 ORTHO05D007587 6.6e-07 59.7 61 52.5
Actinidia07619 Actinidia chinensis HOM05D006143 ORTHO05D007587 5.6e-06 56.6 114 31.6


User provided reference genes

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