Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.6e-77 292.0 147 100.0
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 4.8e-55 218.0 180 68.3
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.0e-42 174.1 167 62.3
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 9.7e-40 167.2 181 55.8
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 6.3e-39 164.5 181 53.0
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.8e-38 162.9 181 56.9
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 3.1e-38 162.2 181 56.4
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 7.0e-38 161.0 181 54.1
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.6e-37 159.8 183 54.6
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.6e-37 159.8 183 54.6
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.0e-36 157.1 181 55.2
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.3e-36 156.8 180 53.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 3.8e-36 155.2 181 55.2
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 6.5e-36 154.5 181 55.2
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 8.5e-36 154.1 181 54.7
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 4.2e-35 151.8 181 55.2
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 6.1e-34 147.9 181 50.3
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.7e-29 132.5 180 46.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 3.5e-29 132.1 181 47.5
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 3.5e-29 132.1 181 46.4
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 5.9e-29 131.3 173 49.7
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 7.7e-29 131.0 184 48.4
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.3e-28 130.2 181 47.5
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.3e-28 130.2 181 45.3
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.7e-28 129.8 181 45.3
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.9e-28 129.0 181 46.4
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.9e-28 129.0 181 45.9
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 6.5e-28 127.9 182 46.2
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.5e-27 126.7 181 44.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.5e-27 125.9 181 44.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.5e-27 125.9 180 42.8
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.2e-27 125.6 180 43.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.5e-27 124.8 180 43.9
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 7.2e-27 124.4 122 55.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.4e-27 124.0 181 44.2
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 9.4e-27 124.0 181 43.1
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.2e-26 123.6 180 44.4
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.1e-26 122.9 180 41.1
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-26 122.9 181 47.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 2.7e-26 122.5 181 45.3
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 4.7e-26 121.7 180 41.7
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 6.1e-26 121.3 180 41.1
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 6.1e-26 121.3 180 41.1
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 6.1e-26 121.3 152 48.7
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 6.1e-26 121.3 128 54.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.0e-25 120.6 180 41.1
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.4e-25 120.2 180 41.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.4e-25 120.2 188 43.1
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.4e-25 120.2 180 43.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 1.4e-25 120.2 183 44.8
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.8e-25 119.8 180 41.1
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.8e-25 119.8 180 41.1
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.3e-25 119.4 177 41.2
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.3e-25 119.4 182 42.9
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.3e-25 119.4 182 45.1
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.0e-25 119.0 182 45.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 3.0e-25 119.0 180 40.6
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 4.0e-25 118.6 180 44.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 5.2e-25 118.2 180 43.9
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 5.2e-25 118.2 186 46.8
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 6.8e-25 117.9 180 40.6
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 6.8e-25 117.9 180 40.6
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.8e-25 117.9 182 41.8
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 8.8e-25 117.5 180 40.6
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.2e-24 117.1 122 51.6
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.5e-24 116.7 180 42.2
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.5e-24 116.7 186 41.9
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.0e-24 116.3 180 40.6
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.0e-24 116.3 181 44.2
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.0e-24 116.3 180 42.2
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.4e-24 115.5 181 44.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 3.4e-24 115.5 199 42.2
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.4e-24 115.2 180 42.2
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 4.4e-24 115.2 180 42.2
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 5.7e-24 114.8 180 42.2
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 5.7e-24 114.8 194 39.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 7.5e-24 114.4 180 42.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 7.5e-24 114.4 180 43.3
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 7.5e-24 114.4 180 40.6
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 7.5e-24 114.4 180 41.7
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 7.5e-24 114.4 181 44.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 7.5e-24 114.4 184 42.9
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 9.8e-24 114.0 180 41.7
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.7e-23 113.2 180 41.1
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.7e-23 113.2 180 42.2
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.7e-23 113.2 180 41.7
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.2e-23 112.8 180 41.7
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.8e-23 112.5 181 43.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 3.7e-23 112.1 122 53.3
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.7e-23 112.1 180 41.7
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.8e-23 111.7 179 40.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.8e-23 111.7 179 40.2
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 4.8e-23 111.7 181 43.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 4.8e-23 111.7 181 43.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 6.3e-23 111.3 180 41.1
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 8.3e-23 110.9 122 53.3
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.3e-23 110.9 122 53.3
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.4e-22 110.2 123 52.0
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.4e-22 110.2 180 41.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 3.1e-22 109.0 184 42.4
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 4.1e-22 108.6 181 43.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 5.4e-22 108.2 181 40.3
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 7.0e-22 107.8 205 40.0
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.2e-21 107.1 122 51.6
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.6e-21 106.7 135 46.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.6e-21 106.7 122 53.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.0e-21 106.3 180 38.9
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.7e-21 105.9 122 50.8
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.5e-21 105.5 122 50.0
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.5e-21 105.5 122 50.8
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.5e-21 105.5 180 42.8
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 4.5e-21 105.1 181 40.3
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 5.9e-21 104.8 122 52.5
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 7.7e-21 104.4 119 54.6
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.3e-20 103.6 124 53.2
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.3e-20 102.8 178 40.4
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.9e-20 102.4 177 37.9
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 6.6e-20 101.3 130 47.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.6e-20 100.9 178 44.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 9.5e-19 97.4 180 36.7
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.5e-19 97.4 120 55.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 9.5e-19 97.4 176 40.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 2.8e-18 95.9 180 36.7
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.0e-17 94.0 120 47.5
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 4.0e-17 92.0 122 45.1
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 6.8e-17 91.3 184 35.9
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.4e-16 89.0 119 51.3
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 5.7e-16 88.2 103 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 4.9e-15 85.1 179 32.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 8.3e-15 84.3 126 40.5
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 2.4e-14 82.8 127 38.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.6e-13 80.1 72 54.2
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 2.7e-13 79.3 126 44.4
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.5e-13 79.0 143 39.9
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 4.5e-13 78.6 104 47.1
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.0e-12 77.4 74 51.4
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.3e-12 77.0 144 41.0
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 2.3e-12 76.3 52 75.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.8e-12 75.5 154 36.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 3.6e-10 68.9 111 43.2
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 4.7e-10 68.6 77 50.6
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.7e-07 60.1 53 54.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.9e-06 56.6 70 44.3


User provided reference genes

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